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    11 repositories

    • rnaflow

      Public
      A simple RNA-Seq differential gene expression pipeline using Nextflow
      HTML
      •
      GNU General Public License v3.0
      •22•102•48•0•Updated Aug 6, 2025Aug 6, 2025

    • ribap

      Public
      A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
      HTML
      •
      GNU General Public License v3.0
      •4•30•13•0•Updated Oct 23, 2024Oct 23, 2024

    • hoelzer-lab.github.io

      Public
      Hoelzer Bioinformatics Lab.
      SCSS
      •0•0•0•0•Updated Mar 3, 2024Mar 3, 2024

    • hypro

      Public
      Extend hypothetical prokka protein annotations using additional homology searches against larger databases
      Python
      •
      GNU General Public License v3.0
      •0•9•2•0•Updated Oct 22, 2021Oct 22, 2021

    • paper_A27

      Public
      SARS-CoV-2 A.27 high-quality images
      GNU General Public License v3.0
      •0•0•0•0•Updated May 14, 2021May 14, 2021

    • president

      Public
      PaiRwisE Sequence IDENtiTy. Calculate pairwise nucleotide identity with respect to a reference sequence.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 17, 2021Jan 17, 2021

    • pocp

      Public
      Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014
      Ruby
      •
      GNU General Public License v3.0
      •7•0•0•0•Updated Jan 6, 2021Jan 6, 2021

    • nf_template

      Public
      A simple template for Nextflow.
      Nextflow
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Feb 18, 2020Feb 18, 2020

    • treat

      Public
      A nextflow pipeline for the evaluation de novo transcriptome assemblies: TranscRiptome EvaluATion (TREAT).
      Nextflow
      •
      GNU General Public License v3.0
      •0•2•5•0•Updated Feb 15, 2020Feb 15, 2020

    • pcago

      Public
      PCAGO is an interactive web service that allows analysis of RNA-Seq read count data with principal component analysis (PCA) and agglomerative clustering. The tool also includes features like read count normalization, filtering read counts by gene annotation and various visualization options.
      R
      •3•4•0•0•Updated Nov 10, 2019Nov 10, 2019

    • evaluation

      Public
      A snakemake de novo transcriptome assembly evaluation.
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 3, 2019Sep 3, 2019