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@hackbio-ca Toronto Bioinformatics Hackathon

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    40 repositories

    • website

      Public
      Toronto Bioinformatics Hackathon Website
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 24, 2025Sep 24, 2025

    • apa-site-choice-prediction

      Public
      🥈 Winner of the 2025 Runner Up Award: Predicting Alternative Polyadenylation Site Choice from mRNA Sequences
      Python
      •
      Other
      •0•2•2•0•Updated Sep 23, 2025Sep 23, 2025

    • federated-learning-starter-kit

      Public
      🥇 Winner of the 2025 First Place Award: A Federated Learning platform for researchers to participate in FL projects without writing any code.
      machine-learningprivacydistributedfederatednocode
      TypeScript
      •
      MIT License
      •0•4•0•0•Updated Sep 22, 2025Sep 22, 2025

    • alzheimers-speech-detection

      Public
      Detecting Alzheimer’s Disease from Speech with Deep Learning
      JavaScript
      •
      MIT License
      •0•0•0•2•Updated Sep 22, 2025Sep 22, 2025

    • petase-activity-gnn

      Public
      🚀 Winner of the 2025 Donnelly Centre Innovation and Commercialization Award: PETase Activity Prediction Using Knowledge Graphs and Graph Neural Networks
      R
      •
      MIT License
      •1•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • .github

      Public
      Toronto Bioinformatics Hackathon GitHub README
      0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • PRISM

      Public
      PRISM: Predicting Responses in Single-cell OMics
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • compile-protein-interactions

      Public
      COMPILE: Context-aware Mapping of Protein Interactions from Literature Evidence
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 21, 2025Sep 21, 2025

    • spatioscript-llm-spatial-biology

      Public
      SpatioScript: LLM-powered spatial biology query model
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 21, 2025Sep 21, 2025

    • synthetic-spatial-wsi

      Public
      Generating spatially resolved synthetic WSI
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 21, 2025Sep 21, 2025

    • genome-based-antibiotic-recommendation

      Public
      Rapid Genome-Based Antibiotic Treatment Recommendation Tool
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 21, 2025Sep 21, 2025

    • virus-population-spread-ml

      Public
      Predicting Virus Population Spread Through Machine Learning and Statistical Modelling
      Python
      •
      MIT License
      •0•0•0•1•Updated Sep 21, 2025Sep 21, 2025

    • tbd-project-24

      Public
      Placeholder repository for Team 24 – update with final project title and description when available
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 21, 2025Sep 21, 2025

    • missense-snv-pathogenicity

      Public
      Predicting whether a missense SNV is Pathogenic or Benign
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 21, 2025Sep 21, 2025

    • MeTrO

      Public
      Placeholder repository for Team 25 – update with final project title and description when available
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 21, 2025Sep 21, 2025

    • deeppath-neurodegeneration-ihc

      Public
      DeepPath: Machine Learning on Histochemical Brain Cancer Images
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Sep 21, 2025Sep 21, 2025

    • epigenetic-memory-loss-methylation

      Public
      Epigenetic Markers of Memory Loss: Using DNA Methylation Profiles to Predict Cognitive Impairment and Dementia
      machine-learningepigeneticsdna-methylationalzheimers-diseasebiomarkerscognitive-impairment
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Sep 21, 2025Sep 21, 2025

    • mini-alphafold

      Public
      Lightweight MiniAlphaFold Implementation
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 21, 2025Sep 21, 2025

    • immune-epitope-prediction

      Public
      HLA-Immune Epitope Prediction Application
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Sep 21, 2025Sep 21, 2025

    • lipid-nanoparticle-screening

      Public
      Ionizable lipid and lipid nanoparticle screening for efficient nucleic acid delivery
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 21, 2025Sep 21, 2025

    • deproteo-protein-design-llm-diffusion

      Public
      DeProteo: A Modular Framework for Protein Design Using Large Language Models and Diffusion Models
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Sep 21, 2025Sep 21, 2025

    • variant-map-imputation-mavedb

      Public
      Calibrated Variant Maps and Lightweight Imputation for Clinically Useful Scores using MaveDB
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 21, 2025Sep 21, 2025

    • spatio-molecular-immunotherapy

      Public
      Spatio-Molecular Deep Learning for Immunotherapy Response Prediction
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 20, 2025Sep 20, 2025

    • disease-susceptibility-analysis

      Public archive
      🏆 Winner of the 2024 Perseverance Award: Create a tool capable of predicting susceptibility to disease in remote or otherwise underserved areas.
      HTML
      •2•0•0•0•Updated Sep 18, 2025Sep 18, 2025

    • cite-seq-foundation-model-evaluation

      Public archive
      🥈 Winner of the 2024 Runner Up Award: Evaluating foundation models for predicting surface protein abundance from RNA expression.
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Sep 17, 2025Sep 17, 2025

    • rna-expression-from-sequence

      Public archive
      🥇 Winner of the 2024 First Place Award: Design a model to predict protein binding affinity to specific DNA sequences using known transcription factors and their binding sites.
      Python
      •
      MIT License
      •1•1•0•0•Updated Sep 17, 2025Sep 17, 2025

    • antimicrobial-peptide-prediction

      Public
      Predicting Antimicrobial Peptides
      MIT License
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • tbd-project-21

      Public
      Placeholder repository for Team 21 – update with final project title and description when available
      MIT License
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • tbd-project-22

      Public
      Placeholder repository for Team 22 – update with final project title and description when available.
      MIT License
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • tbd-project-23

      Public
      Placeholder repository for Team 23 – update with final project title and description when available
      MIT License
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025