Repositories list

• vigor-prs

  Public
  Computing PRS for VIGOR participants

  HTML

  •0•0•0•0•Updated Aug 5, 2025Aug 5, 2025

• skin-reQTLs

  Public
  Shell

  •1•0•0•1•Updated Jul 31, 2025Jul 31, 2025

• VIGOR-surveys

  Public
  Processing survey data from the VIGOR cohort for analysis

  HTML

  •0•1•0•0•Updated Jul 18, 2025Jul 18, 2025

• eQTL_website.github.io

  Public
  Developing a companion website for Crystal's eQTL project

  HTML

  •0•0•0•0•Updated Apr 1, 2024Apr 1, 2024

• ShahSJSanalysis

  Public
  R

  •2•0•0•0•Updated Sep 23, 2023Sep 23, 2023

• VDJChef

  Public
  VDJChef is an R package to import, visualize and analyze cellranger vdj outputs.

  R

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Aug 29, 2022Aug 29, 2022

• slamseq_pipeline

  Public
  Nextflow

  •2•0•0•0•Updated Aug 4, 2022Aug 4, 2022

• SlamTools

  Public
  Java

  •

  MIT License

  •1•0•0•0•Updated Mar 29, 2022Mar 29, 2022

• igv

  Public
  Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

  Java

  •

  MIT License

  •397•0•0•0•Updated Jan 29, 2022Jan 29, 2022

• vitiligo-website

  Public
  Template for creating your website with R markdown.

  HTML

  •337•0•0•0•Updated Jan 22, 2022Jan 22, 2022

• SignallingSingleCell

  Public
  R

  •8•1•0•0•Updated Dec 20, 2021Dec 20, 2021

• SPRITE_ViewPoint_Analysis

  Public
  View point centric approach that can be used to call enhancer promoter interactions, when using promoters as view point from SPRITE or SIP data

  R

  •0•0•0•0•Updated Aug 17, 2020Aug 17, 2020

• inDrop_Processing

  Public
  Python

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated Aug 12, 2020Aug 12, 2020

• ESAT

  Public
  Stripped-down version of original ESAT code

  Java

  •5•6•3•1•Updated Jan 20, 2020Jan 20, 2020

• scRNASeq

  Public
  R

  •0•0•0•0•Updated Apr 12, 2018Apr 12, 2018

• umms.core

  Public
  Java

  •1•0•0•0•Updated Jul 12, 2017Jul 12, 2017

• siphy

  Public
  Phylogenetic footprinting software for genome-wide analysis

  2•0•0•0•Updated Jul 11, 2017Jul 11, 2017

• pumpApp

  Public
  Pump controls application

  JavaScript

  •2•0•0•0•Updated Feb 26, 2017Feb 26, 2017

• inDropControl

  Public
  0•0•0•0•Updated Nov 9, 2016Nov 9, 2016

• schemas

  Public
  Work on data models and APIs for Genomic data.

  Python

  •

  Apache License 2.0

  •112•0•0•0•Updated May 22, 2015May 22, 2015