Repositories list

• ContACT.jl

  Public
  Category theory applied to contact matrices

  HTML

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  MIT License

  •00 forks•11 star•11 issue•11 pull request•Updated Aug 19, 2026Aug 19, 2026

• CategoricalInterventions.jl

  Public
  Categorical interventions for epidemiological models in Julia

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 27, 2026Jul 27, 2026

• DDSALineLists.jl

  Public
  Synthetic epidemic line lists from a discrete-time Dynamic Survival Analysis (DDSA) generative model

  Julia

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  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 15, 2026Jul 15, 2026

• DDSA

  Public
  HTML

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  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 24, 2026Jun 24, 2026

• NetworkOutbreaks.jl

  Public
  Stochastic compartmental epidemic simulation on contact networks

  HTML

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 18, 2026May 18, 2026

• EdgeBasedModels.jl

  Public
  Edge-based compartmental epidemic models for configuration-model networks

  Julia

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  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated May 18, 2026May 18, 2026

• NodeBasedModels.jl

  Public
  Node-based and moment-closure epidemic models on networks

  Julia

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 17, 2026May 17, 2026

• CategoricalOutbreaks.jl

  Public
  Categorical outbreak line-list representations and aggregation with Catlab

  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated May 5, 2026May 5, 2026

• Outbreaks.jl

  Public
  Curated disease outbreak datasets for Julia — a port of the R outbreaks package

  HTML

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  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated May 5, 2026May 5, 2026

• Starsim.jl

  Public
  Julia port of the Starsim agent-based disease modeling framework

  HTML

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  MIT License

  •11 fork•11 star•00 issues•11 pull request•Updated Apr 21, 2026Apr 21, 2026

• Odin.jl

  Public
  A Julia toolkit for defining, simulating, and fitting compartmental infectious disease models (port of odin2/dust2/monty)

  Julia

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  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Apr 20, 2026Apr 20, 2026

• DataMigrations.jl

  Public
  Julia

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  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 18, 2026Apr 18, 2026

• StockFlow.jl

  Public
  Julia

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  MIT License

  •99 forks•00 stars•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• AlgebraicRewriting.jl

  Public
  Implementations of algebraic rewriting techniques like DPO, SPO, SqPO.

  Julia

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  MIT License

  •99 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• AlgebraicABMs.jl

  Public
  Stochastic graph rewriting for agent based modeling

  Julia

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  MIT License

  •44 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• Catlab.jl

  Public
  A framework for applied category theory in the Julia language

  Julia

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  MIT License

  •7373 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• June.jl

  Public
  HTML

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• odin-mtk-vignettes

  Public
  HTML

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 26, 2026Mar 26, 2026

• gam-frameworks

  Public
  R

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  MIT License

  •00 forks•22 stars•55 issues•00 pull requests•Updated Mar 12, 2026Mar 12, 2026

• EpiPolicies

  Public
  Optimal control for infectious disease epidemics

  Jupyter Notebook

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  MIT License

  •33 forks•88 stars•22 issues•00 pull requests•Updated Feb 18, 2026Feb 18, 2026

• sir-julia

  Public
  Various implementations of the classical SIR model in Julia

  HTML

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  MIT License

  •4242 forks•216216 stars•107107 issues•11 pull request•Updated Nov 20, 2025Nov 20, 2025

• EpiReplicants

  Public
  Replicants of published epidemiological models

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Sep 29, 2025Sep 29, 2025

• EpiCats

  Public
  Applied category theory applied to epidemiological models

  HTML

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  MIT License

  •22 forks•1212 stars•88 issues•00 pull requests•Updated Aug 7, 2024Aug 7, 2024

• epimdj

  Public
  A Julia port of the R code from Bjornstad's Epidemics: Models and Data Using R

  HTML

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  MIT License

  •11 fork•77 stars•00 issues•00 pull requests•Updated Jun 1, 2023Jun 1, 2023

• chaos-measles

  Public
  Simulating chaotic dynamics in measles models

  Julia

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 10, 2023Feb 10, 2023

• epirecipes-overview-2018

  Public
  Overview of first Epirecipes meeting

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 25, 2019Apr 25, 2019

• epicookbook

  Public
  A cookbook of epidemiological models

  Jupyter Notebook

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  MIT License

  •730730 forks•1414 stars•00 issues•11 pull request•Updated Mar 1, 2019Mar 1, 2019

• epirecipes-intro-2018

  Public
  Introductory talk for Epirecipes 2018 meeting

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 1, 2018Oct 1, 2018

• epirecipes.github.io

  Public
  :sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

  HTML

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  MIT License

  •17k17k forks•11 star•00 issues•00 pull requests•Updated Sep 28, 2018Sep 28, 2018

• shopping-list

  Public
  To-do list for epirecipes

  MIT License

  •00 forks•55 stars•5757 issues•00 pull requests•Updated Aug 7, 2018Aug 7, 2018