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@codialab Computational Diabetology

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    12 repositories

    • sqz

      Public
      /ˈskuzi/
      gfapangenomicsbpegrammar-compression
      Rust
      •
      MIT License
      •1•10•0•0•Updated Jan 8, 2026Jan 8, 2026

    • panacus

      Public
      Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
      graphgfapangenomicspangenomepangenome-graphpangenome-growth
      Rust
      •
      MIT License
      •10•117•20•0•Updated Dec 10, 2025Dec 10, 2025

    • HySim

      Public
      Simulation pipeline simulating short single cell (10x Chromium) and long bulk (PacBio) reads from the same data
      Python
      •0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • codialab.github.io

      Public
      Group website of the CODIA lab
      SCSS
      •
      MIT License
      •0•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • ml_helpers

      Public
      Rust
      •
      MIT License
      •0•0•0•0•Updated Nov 4, 2025Nov 4, 2025

    • scallop2

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •7•0•0•0•Updated Nov 4, 2025Nov 4, 2025

    • hprc-qc

      Public
      Perl
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 2, 2025Oct 2, 2025

    • trim-graph

      Public
      Simple tool to remove segments and links from GFA files that are not covered by paths
      Rust
      •
      MIT License
      •0•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • pqa

      Public
      Pangenome Quality Assessment
      Nextflow
      •0•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • GFAffix

      Public
      GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
      gfapangenomicshandlegraph
      Rust
      •
      MIT License
      •5•36•2•0•Updated May 29, 2025May 29, 2025

    • .github

      Public
      0•0•0•0•Updated May 26, 2025May 26, 2025

    • spp-dcj

      Public
      Python
      •
      MIT License
      •0•3•0•0•Updated Mar 6, 2025Mar 6, 2025