Repositories list

• sophys-cli-extensions

  Public
  SIRIUS-specific extensions for the sophys-cli project, dealing with code customized to SIRIUS beamlines

  Python

  •

  GNU General Public License v3.0

  •0•0•0•1•Updated Mar 21, 2025Mar 21, 2025

• ADPimega

  Public
  EPICS areaDetector driver for the PiMega detectors

  C++

  •

  Other

  •1•3•12•6•Updated Mar 21, 2025Mar 21, 2025

• ssc-raft

  Public
  Fast tomographic reconstruction

  C

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 21, 2025Mar 21, 2025

• sophys-cli-core

  Public
  Core functionality for the sophys-cli project, a commandline interface for Bluesky orchestration at SIRIUS

  Python

  •

  GNU Lesser General Public License v3.0

  •0•0•2•0•Updated Mar 21, 2025Mar 21, 2025

• sophys-common

  Public
  A collection of Bluesky and Ophyd utility code for SIRIUS beamlines and support groups

  kafkablueskyophyd+ 1sophys

  Python

  •

  GNU Lesser General Public License v3.0

  •2•1•6•7•Updated Mar 21, 2025Mar 21, 2025

• conv-fastcorrs-epics-ioc

  Public
  Makefile

  •0•0•0•0•Updated Mar 21, 2025Mar 21, 2025

• epics-in-docker

  Public
  Container images with EPICS and modules

  Shell

  •2•5•13•9•Updated Mar 20, 2025Mar 20, 2025

• sophys-web

  Public
  Bluesky http-server client apps developed by the Control Software Group @LNLS/CNPEM.

  TypeScript

  •

  GNU General Public License v3.0

  •0•3•1•0•Updated Mar 20, 2025Mar 20, 2025

• iguape

  Public
  Iguape (Paineira Graphical User Interface) is a program for visualization and processing of XRD measurements during in situ experiments at Paineira

  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Mar 20, 2025Mar 20, 2025

• motorPIGCS2

  Public
  EPICS asyn motor drivers for PI GCS2 controllers

  C++

  •5•0•0•0•Updated Mar 14, 2025Mar 14, 2025

• bluesky-workshop

  Public
  Jupyter Notebook

  •2•1•0•1•Updated Mar 13, 2025Mar 13, 2025

• deepsirius-ui

  Public
  Web UI designed for deep learning-based segmentation analysis of tomographic images from the Sirius synchrotron. It handles dataset creation, model training, and inference, interacting with the Sirius cluster via SLURM jobs.

  TypeScript

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Mar 13, 2025Mar 13, 2025

• sophys-gui

  Public
  Python

  •

  GNU Lesser General Public License v3.0

  •0•2•0•1•Updated Mar 6, 2025Mar 6, 2025

• MarvinDocs

  Public
  Repositório de documentação produzido pelo mdbook para o HPC Marvin no LNBio/CNPEM

  CSS

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

• hpc-containers

  Public
  Singularity containers for HPC

  0•0•1•0•Updated Feb 27, 2025Feb 27, 2025

• launch3d

  Public
  Launcher for Annotat3D instances.

  TypeScript

  •

  GNU General Public License v3.0

  •0•1•3•0•Updated Feb 12, 2025Feb 12, 2025

• pmac

  Public
  Driver for the Delta Tau PMAC motion controller family.

  C++

  •

  Apache License 2.0

  •19•0•0•0•Updated Jan 29, 2025Jan 29, 2025

• AtomPacker

  Public
  A python package for packing nanoclusters into supramolecular cages.

  modelingpython-packagenanoparticles+ 3nanoclusterssupramolecular-cagesatom-packing

  Python

  •

  GNU General Public License v3.0

  •0•2•0•5•Updated Jan 29, 2025Jan 29, 2025

• MAS-lnbio-biosensor-paper

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

• annotat3d

  Public
  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• specsAnalyser

  Public
  An EPICS Area Detector driver for SPECS Phoibos electron spectrometers, with DLD (Delay Line Detector). The driver remotely controls an instance of SpecsLab Prodigy running on a Windows 7 server. SpecsLab Prodigy must be configured in Remote Control mode.

  C++

  •

  Apache License 2.0

  •4•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• motorNewport

  Public
  EPICS motor drivers for Newport controllers

  C++

  •7•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• ddx3x-stress-granules-analyses

  Public
  TeX

  •0•1•1•0•Updated Dec 2, 2024Dec 2, 2024

• CellViability

  Public
  Cell viability in microscopy images.

  HTML

  •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

• ad-aravis-epics-ioc

  Public
  ADAravis-based IOC for GenICam cameras

  Batchfile

  •0•0•1•2•Updated Nov 12, 2024Nov 12, 2024

• s4ci

  Public
  S4CI - Sapucaia Software Solution for SAXS Customized Interface

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• ad-sim-epics-ioc

  Public
  ADSimDetector IOC

  Batchfile

  •1•0•0•1•Updated Oct 21, 2024Oct 21, 2024

• XRDplayground

  Public
  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Oct 11, 2024Oct 11, 2024

• .github

  Public
  0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• omero-dev-guide

  Public
  Guia de configuração do ambiente de desenvolvimento de funcionalidades do OMERO

  0•0•0•0•Updated Aug 14, 2024Aug 14, 2024