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    168 repositories

    • data-models

      Public
      Collection of various biomedical data models in parseable formats.
      schemacsvvocabulary
      schemacsvvocabularybiomedicaldata-models
      8•29•17•0•Updated Jan 5, 2026Jan 5, 2026

    • smart-asthma

      Public
      Service for the SMART Asthma EHR-integrated system.
      Go
      •0•0•0•0•Updated Jun 4, 2025Jun 4, 2025

    • visual-search-strat-cluster

      Public
      MATLAB
      •
      Other
      •0•0•0•0•Updated Jun 2, 2025Jun 2, 2025

    • ecease-smart-app

      Public
      EHR integrated SMART app for the eCEASE project
      JavaScript
      •0•0•0•0•Updated May 30, 2025May 30, 2025

    • dr-trace

      Public
      HTTP request trace capture and analysis
      Go
      •0•0•0•0•Updated May 30, 2025May 30, 2025

    • sql-agent

      Public
      HTTP interface for executing ad-hoc SQL queries.
      mysqlsqldatabase
      mysqlsqldatabasemicroservicesqlitepostgresqloraclesql-agent
      Go
      •
      BSD 2-Clause "Simplified" License
      •23•94•10•0•Updated Jul 5, 2023Jul 5, 2023

    • data-models-sqlalchemy

      Public
      SQLAlchemy models and DDL and ERD generation from chop-dbhi/data-models style JSON endpoints.
      Python
      •
      Other
      •3•11•7•1•Updated May 22, 2023May 22, 2023

    • infomodels

      Public
      One CLI to rule them all.
      Go
      •
      Other
      •2•0•0•0•Updated May 17, 2023May 17, 2023

    • GGIR

      Public
      Code corresponding to R package GGIR
      R
      •
      GNU Lesser General Public License v3.0
      •72•0•0•0•Updated May 9, 2023May 9, 2023

    • vscode-multiline-string-editor

      Public
      Edit multiline strings that need to be encoded as single-line strings (for example, JSON strings that contain literal `\n` characters) in Visual Studio Code.
      TypeScript
      •
      Other
      •5•5•2•2•Updated Apr 1, 2023Apr 1, 2023

    • ehb-datasources

      Public
      datasource drivers, e.g. REDCap and Nautilus, that can be plugged into the Biorepository Portal
      Python
      •
      BSD 2-Clause "Simplified" License
      •2•2•21•0•Updated Mar 31, 2023Mar 31, 2023

    • icebrrrg

      Public
      R
      •
      Other
      •0•0•0•0•Updated Mar 28, 2023Mar 28, 2023

    • prometheus-sql

      Public
      Service that exposes Prometheus metrics for a SQL result set.
      sqlmetricsprometheus
      sqlmetricsprometheus
      Go
      •
      BSD 2-Clause "Simplified" License
      •54•204•6•8•Updated Mar 6, 2023Mar 6, 2023

    • brpv2

      Public
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •6•0•0•0•Updated Mar 6, 2023Mar 6, 2023

    • igv-webapp

      Public
      IGV Web App (forked for arcus purposes)
      JavaScript
      •
      MIT License
      •51•0•0•0•Updated Feb 27, 2023Feb 27, 2023

    • masino-lab-obesity-incidence

      Public
      Obesity incidence research output under PBD project
      Rich Text Format
      •0•1•0•0•Updated May 23, 2022May 23, 2022

    • ehb-service

      Public
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•1•13•1•Updated Apr 23, 2022Apr 23, 2022

    • data-models-validator

      Public
      Set of tools for validating data that should conform to a data model.
      Go
      •2•1•4•0•Updated Jun 1, 2021Jun 1, 2021

    • strac

      Public
      Go
      •0•0•0•1•Updated Dec 18, 2020Dec 18, 2020

    • ehb-client

      Public
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•4•0•Updated Oct 8, 2020Oct 8, 2020

    • MIST

      Public
      A package to support the Modified Interval Set Tree
      Python
      •0•0•0•0•Updated Jan 8, 2020Jan 8, 2020

    • dicom-anon

      Public
      Python DICOM Anonymizer
      Python
      •
      BSD 2-Clause "Simplified" License
      •22•67•12•1•Updated Dec 19, 2019Dec 19, 2019

    • diff-table

      Public
      diffeventscsv
      diffeventscsvsqltableeventsourcingsnapshots
      Go
      •1•26•1•0•Updated Oct 30, 2019Oct 30, 2019

    • avocado

      Public archive
      Metadata APIs for Django
      Python
      •
      Other
      •10•41•8•3•Updated Oct 22, 2019Oct 22, 2019

    • dataexpress

      Public
      [NOT MAINTAINED] DataExpress is a simple, Scala-based cross database ETL toolkit supporting Postgres, MySql, Oracle, SQLServer, and Sqlite
      Scala
      •
      BSD 2-Clause "Simplified" License
      •10•73•31•2•Updated Jul 25, 2019Jul 25, 2019

    • modeltree

      Public archive
      Django model relation tree traversal, i.e. automatic joins.
      Python
      •6•17•0•0•Updated Jul 3, 2019Jul 3, 2019

    • python-social-auth

      Public
      2016-deprecated, but Django v1.5 compatible, PSA from omab as: Social auth made simple
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1.1k•1•0•0•Updated Mar 7, 2019Mar 7, 2019

    • social-app-django

      Public
      Python Social Auth - Application - Django
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •394•0•0•0•Updated Mar 6, 2019Mar 6, 2019

    • sql-importer

      Public
      Import CSV files into Postgres with automatic column typing and table creation.
      csvsqlimporter
      csvsqlimporterpostgresqlinference
      Go
      •
      MIT License
      •2•15•1•0•Updated Aug 19, 2018Aug 19, 2018

    • twitter-adr-blstm

      Public
      A model for finding mentions of adverse drug reactions in Twitter posts
      Python
      •
      GNU General Public License v3.0
      •15•33•0•0•Updated Aug 6, 2018Aug 6, 2018
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