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    289 repositories

    • ORBiT

      Public
      ONT RNAseq Bioinformatics Toolkit
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•16•1•Updated Apr 14, 2026Apr 14, 2026

    • HPC_usage_reports

      Public
      Scripts to pull resource usage data from job logs for Artemis and Gadi into tab-delimited format and to report queue time from job history
      nextflowhpcartemis
      nextflowhpcartemisgadinf-corenci-gadiusyd-artemis
      Perl
      •0•3•2•1•Updated Apr 14, 2026Apr 14, 2026

    • scrnavigator-nf

      Public
      A Nextflow pipeline for processing single cell RNA sequencing data and performing differential expression and functional enrichment analyses.
      GNU General Public License v3.0
      •0•0•2•2•Updated Apr 14, 2026Apr 14, 2026

    • nf-gadi

      Public
      Groovy
      •
      Apache License 2.0
      •1•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • OmekaS-MappingExtensions

      Public
      Forking this to play with adding a sidebar
      JavaScript
      •
      GNU General Public License v3.0
      •1•0•7•0•Updated Apr 14, 2026Apr 14, 2026

    • gpu-cluster-onboarding-guide

      Public
      CSS
      •
      MIT License
      •0•1•0•2•Updated Apr 14, 2026Apr 14, 2026

    • Gadi-benchmarking

      Public
      Template scripts to automate submission of identical benchmark tasks with increasing compute resources
      Shell
      •0•1•1•0•Updated Apr 12, 2026Apr 12, 2026

    • links

      Public
      Url shortener for Sydney Informatics Hub links
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • customising-nfcore-workshop-2026

      Public
      Materials for the 2026 delivery of the Customising nf-core Australian BioCommons workshop.
      0•0•2•0•Updated Apr 9, 2026Apr 9, 2026

    • cc-leaflet-testbed

      Public
      Testing Leaflet maps for Curated Collections
      JavaScript
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • hansard-rights-data-vis

      Public
      Data visualisation of UK Hansard data using Observable Framework
      JavaScript
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • runai-cli-wizard

      Public
      Make your RunAI CLI commands to make workloads on the Sydney GPU Cluster
      JavaScript
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • shelley-bio

      Public
      Beautiful shelley 🐢
      Python
      •0•1•7•1•Updated Apr 8, 2026Apr 8, 2026

    • ngc-omeka

      Public
      An enduring web publishing platform solution for Humanities, Arts and Social Sciences (HASS) and Indigenous research data collections.
      PHP
      •1•0•0•2•Updated Apr 8, 2026Apr 8, 2026

    • usyd-gadi-onboarding-guide

      Public
      User guide for onboarding USyd users to NCI Gadi
      CSS
      •
      MIT License
      •1•4•1•0•Updated Apr 7, 2026Apr 7, 2026

    • omeka-s-cc-theme

      Public
      Experimenting with using Omeka S themes to customise the frontend
      SCSS
      •
      GNU General Public License v3.0
      •17•0•0•0•Updated Apr 7, 2026Apr 7, 2026

    • omeka-s-docker

      Public
      Dockerisation for the Curated Collections distribution of Omeka S
      Dockerfile
      •0•0•6•0•Updated Apr 6, 2026Apr 6, 2026

    • Parabricks-Genomics-nf

      Public
      Scalable Nextflow implementation of germline alignment and short variant calling with Parabricks for NCI Gadi HPC.
      Nextflow
      •
      GNU General Public License v3.0
      •4•8•6•1•Updated Apr 1, 2026Apr 1, 2026

    • BioShell

      Public
      Shell
      •1•0•0•0•Updated Apr 1, 2026Apr 1, 2026

    • sih-seqera-platform

      Public
      Python
      •0•0•0•2•Updated Mar 30, 2026Mar 30, 2026

    • omeka-s-import-tools

      Public
      Python toolkit for tidying CSVs for Omeka S import
      Python
      •0•0•0•0•Updated Mar 30, 2026Mar 30, 2026

    • rshinyapp-template

      Public
      R
      •0•1•0•0•Updated Mar 18, 2026Mar 18, 2026

    • nf4ls-materials

      Public template
      NF4LS trainer materials
      Shell
      •
      Creative Commons Attribution 4.0 International
      •1•0•13•0•Updated Mar 16, 2026Mar 16, 2026

    • bioinformatics-training

      Public
      SIH bioinformatics training
      trainingbioinformaticsgenomics
      trainingbioinformaticsgenomicsnextflowbiologytraining-materials
      0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • curated-collections-deploy

      Public
      Terraform setup for Curated Collections
      HCL
      •0•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • stats-resources

      Public
      SIH Statistics resources
      HTML
      •
      Other
      •4•7•1•0•Updated Mar 15, 2026Mar 15, 2026

    • nf4hpc-materials

      Public
      Shell
      •
      Creative Commons Attribution 4.0 International
      •0•0•15•0•Updated Mar 10, 2026Mar 10, 2026

    • aigis

      Public
      Tools for aerial and satellite imagery acquisition, processing, annotation, and analysis using artificial intelligence
      pythoncomputer-visiongeospatial
      pythoncomputer-visiongeospatialgistransformerspytorchaerial-imagerysegmentation
      Python
      •
      MIT License
      •1•10•4•1•Updated Mar 10, 2026Mar 10, 2026

    • omeka-s-intro

      Public
      Short intro to Omeka S
      CSS
      •
      MIT License
      •0•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • ace3tool

      Public
      ACE-III online dementia screening tool
      TypeScript
      •1•0•0•0•Updated Feb 25, 2026Feb 25, 2026
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