SigProfilerSuite
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15 repositories
SigProfilerExtractor
PublicSigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative muta…SigProfilerAssignment
Public- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the ge…
SigProfilerTopography
PublicSigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA tran…SigProfilerSimulator
PublicSigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signature…SigProfilerClusters
PublicTool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on…TMB_plotter
Public archiveSigProfilerPlotting
PublicSigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. Th…SigProfilerAssignmentR
Public archiveSigProfilerPlottingR
Public archiveAn R wrapper for running the SigProfilerPlotting frameworkSigProfilerSimulatorR
Public archiveSigProfilerExtractorR
Public archiveAn R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the nu…SigProfilerMatrixGeneratorR
Public archiveR wrapper for utilizing the SigProfilerMatrixGenerator frameworkSigProfilerSingleSample
Public archive
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