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@PennLINC Lifespan Informatics and Neuroimaging Center

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    242 repositories

    • qsiprep

      Public
      Preprocessing of diffusion MRI
      pipelinesdistortion-correctionbids
      pipelinesdistortion-correctionbidsmotion-correctiondiffusion-mridenoising-images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •63•194•71•8•Updated Oct 15, 2026Oct 15, 2026

    • sypres-docs

      Public
      Analysis and documentation repo for SYPRES.
      JavaScript
      •
      MIT License
      •0•3•2•6•Updated Oct 15, 2026Oct 15, 2026

    • aslprep

      Public
      Preprocessing of arterial spin labeling (ASL) data
      aslcbfbids-apps
      aslcbfbids-apps
      Python
      •
      Other
      •22•64•44•5•Updated Oct 14, 2026Oct 14, 2026

    • dipy

      Public
      DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analy…
      Python
      •
      Other
      •519•0•0•0•Updated Oct 14, 2026Oct 14, 2026

    • qsiplan

      Public
      Preprocessing workflow planning for BIDS dMRI data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•3•0•Updated Oct 14, 2026Oct 14, 2026

    • unpile-rs

      Public
      Rust
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 14, 2026Oct 14, 2026

    • mrsim-protocol

      Public
      MRI acquisition protocol for building aslscan and TRXScan simulator inputs from one human subject
      MIT License
      •0•0•0•0•Updated Oct 13, 2026Oct 13, 2026

    • luo_sex_diff

      Public
      HTML
      •0•0•0•0•Updated Oct 12, 2026Oct 12, 2026

    • TRXScan

      Public
      Simulate realistic dMRI with streamlines and psegs
      Python
      •
      Apache License 2.0
      •1•1•9•0•Updated Oct 12, 2026Oct 12, 2026

    • unpile-testdata

      Public
      0•0•0•0•Updated Oct 11, 2026Oct 11, 2026

    • cs_dmri

      Public
      Rust/Python methods for fast recon of dMRI data
      Rust
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • odx-rs

      Public
      Rust
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 9, 2026Oct 9, 2026

    • CuBIDS

      Public
      Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
      neuroscienceneuroimagingneuroinformatics
      neuroscienceneuroimagingneuroinformaticspython-packagedata-curationneuroscience-methodsneuroimaging-data-sciencedata-organization
      Python
      •
      MIT License
      •13•30•45•11•Updated Oct 9, 2026Oct 9, 2026

    • aslscan

      Public
      ASL simulator
      Rust
      •0•0•4•0•Updated Oct 8, 2026Oct 8, 2026

    • mrsim-acq

      Public
      Rust
      •0•0•2•0•Updated Oct 8, 2026Oct 8, 2026

    • linc-bids-llm

      Public
      Python
      •0•0•0•0•Updated Oct 8, 2026Oct 8, 2026

    • luo_wm_dev

      Public
      HTML
      •0•2•0•0•Updated Oct 8, 2026Oct 8, 2026

    • macedo_wm_exposome

      Public
      We investigated how the childhood exposome, a multidimensional measure capturing total environmental exposures across the lifespan, relates to white matter shap…
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 7, 2026Oct 7, 2026

    • asl-book

      Public
      A Jupyter book about arterial spin labeling
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 7, 2026Oct 7, 2026

    • mirror

      Public
      Myelin mapping test-retest study
      Python
      •
      MIT License
      •0•2•1•0•Updated Oct 6, 2026Oct 6, 2026

    • qsiprep_build

      Public
      Builds the dependencies for qsiprep
      Shell
      •
      Apache License 2.0
      •6•4•1•1•Updated Oct 5, 2026Oct 5, 2026

    • qsiprep_TORTOISE

      Public
      C++
      •
      GNU General Public License v3.0
      •0•0•2•1•Updated Oct 5, 2026Oct 5, 2026

    • diffusion-book

      Public
      Diffusion MRI executable book
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 1, 2026Oct 1, 2026

    • bdt

      Public
      BIDS Derivatives Transformer
      Python
      •
      Apache License 2.0
      •1•0•4•2•Updated Oct 1, 2026Oct 1, 2026

    • babs

      Public
      BIDS App Bootstrap (BABS)
      Python
      •
      MIT License
      •8•13•56•8•Updated Sep 30, 2026Sep 30, 2026

    • qsirecon

      Public
      Reconstruction of preprocessed q-space images (dMRI)
      mribidsdwi
      mribidsdwidiffusion-mribids-formatdmribidsappbids-apps
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•25•79•5•Updated Sep 29, 2026Sep 29, 2026

    • ihmt_proc

      Public
      Python
      •
      Other
      •3•0•0•0•Updated Sep 29, 2026Sep 29, 2026

    • pymp2rage

      Public
      Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data
      Jupyter Notebook
      •
      Other
      •16•0•0•0•Updated Sep 29, 2026Sep 29, 2026

    • ModelArrayIO

      Public
      Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•12•11•Updated Sep 29, 2026Sep 29, 2026

    • trxscan-phantoms

      Public
      Phantom data for TRXScan simulations
      0•0•0•0•Updated Sep 25, 2026Sep 25, 2026
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