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    25 repositories

    • TURMorIC

      Public
      Python
      •
      MIT License
      •6•0•2•0•Updated Jul 17, 2025Jul 17, 2025

    • diff_predictor

      Public
      Repository for diff_predictor, a software package for Machine Learning predictions of nanoparticle diffusion data
      Jupyter Notebook
      •
      MIT License
      •0•1•15•0•Updated Jun 3, 2025Jun 3, 2025

    • pytrackmate

      Public
      Python code to automate running the Trackmate plugin from ImageJ
      Python
      •
      MIT License
      •1•2•3•0•Updated Feb 14, 2025Feb 14, 2025

    • cellmorphflows

      Public
      A repository for jupyter notebook workflows for experimentalists to prep their data for the VAMPIRE morphology modeling.
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Feb 12, 2025Feb 12, 2025

    • R_stats

      Public
      Scripts for running stats in R
      R
      •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • diff_classifier

      Public
      This project aims to take existing analyses of nanoparticle diffusion that I have worked on previously and expand the analysis to additional features.
      Python
      •
      MIT License
      •15•4•4•3•Updated Jun 18, 2024Jun 18, 2024

    • diff_visualizer

      Public
      Package for efficiently and reproducibly creating data visualizations for nanoparticle diffusion data
      Jupyter Notebook
      •
      MIT License
      •0•1•8•0•Updated Apr 23, 2024Apr 23, 2024

    • prevampire

      Public
      Supplementary Package to Apply to existing VAMPIRE package pipeline.
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 28, 2024Feb 28, 2024

    • MPT-database

      Public
      Python
      •1•1•0•0•Updated Nov 28, 2023Nov 28, 2023

    • textile

      Public
      Nance Lab Data Science in the Biological Sciences GitHub Repository for Modules and Activities
      Jupyter Notebook
      •
      MIT License
      •5•3•1•4•Updated Jul 6, 2023Jul 6, 2023

    • vampire-analysis

      Public
      VAMPIRE (Visually Aided Morpho-Phenotyping Image Recognition) analysis quantifies and visualizes heterogeneity of cell and nucleus morphology.
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated May 8, 2023May 8, 2023

    • microFIBER

      Public
      Respository for the microFIBER paper and all analysis pipeliens
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated May 18, 2022May 18, 2022

    • HIE_HIP_NPs_sims

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 31, 2021Aug 31, 2021

    • nanoformulations-database

      Public
      PostgreSQL queries for creating and searching our nanoformulations database.
      MIT License
      •0•0•1•0•Updated Apr 26, 2021Apr 26, 2021

    • ifthresholds

      Public
      IfThresholds is a Python package to score and assess standard threshold methods for fluorescent images.
      Python
      •
      MIT License
      •1•0•0•0•Updated Mar 19, 2021Mar 19, 2021

    • textile_kaleb

      Public
      Repository for Nance Lab TEXTILE modules and activities
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 5, 2021Jan 5, 2021

    • textile_july

      Public
      Repository for Nance Lab TEXTILE modules and activity participantion
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 27, 2020Aug 27, 2020

    • textile_AliToghani

      Public
      repository for nance lab textile modules and activities
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 6, 2020Aug 6, 2020

    • fiberf

      Public
      Skeleton repository for our FFIBER method applied to immunohistochemistry slices from the ferret.
      Python
      •
      MIT License
      •0•2•0•0•Updated Jul 31, 2020Jul 31, 2020

    • textile_robin

      Public
      repo for NanceLab TEXTILE modules
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 30, 2020Jul 30, 2020

    • textile_hawley

      Public
      Repository for Nance Lab TEXTILE modules and activity participation.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 30, 2020Jul 30, 2020

    • textile_Mengying

      Public
      Repository for Nance Lab TEXTILE modules and activities
      MIT License
      •0•0•0•0•Updated Jul 30, 2020Jul 30, 2020

    • vampire_open

      Public
      open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition
      Python
      •
      GNU General Public License v3.0
      •11•1•0•0•Updated May 25, 2020May 25, 2020

    • ifmodels

      Public
      Package for
      Jupyter Notebook
      •
      MIT License
      •2•2•0•0•Updated Jan 18, 2020Jan 18, 2020

    • diff_register

      Public
      Jupyter Notebook
      •
      MIT License
      •5•0•0•0•Updated Feb 12, 2019Feb 12, 2019