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    32 repositories

    • carver

      Public
      MATLAB
      •3•1•0•0•Updated Sep 24, 2024Sep 24, 2024

    • mouselight_toolbox

      Public
      A Matlab toolbox for doing MouseLight-y things
      MATLAB
      •1•2•0•0•Updated Apr 4, 2024Apr 4, 2024

    • soma-detector

      Public
      Code for automatically detecting putative somata
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Aug 14, 2023Aug 14, 2023

    • render

      Public
      Stitching of individual images tiles into coherent volume
      Julia
      •
      Other
      •1•1•0•0•Updated Aug 14, 2023Aug 14, 2023

    • freezing

      Public
      Code for compressing raw tiles to .mj2
      MATLAB
      •
      Other
      •0•0•0•0•Updated May 24, 2023May 24, 2023

    • hortacloud-protocol

      Public
      Python
      •0•0•0•0•Updated Mar 29, 2023Mar 29, 2023

    • workstation

      Public archive
      Archived fork. The most up-to-date code can be found at JaneliaSciComp/workstation.
      Java
      •
      Other
      •12•3•0•0•Updated Dec 8, 2021Dec 8, 2021

    • skeletonize

      Public
      Shell
      •2•0•0•0•Updated Nov 13, 2021Nov 13, 2021

    • pipeline-stitching

      Public
      Stitching pipeline that creates the YML file to be consumed by the render
      MATLAB
      •2•1•0•0•Updated Aug 22, 2021Aug 22, 2021

    • pipeline-featmatch

      Public
      MATLAB
      •2•0•0•0•Updated Aug 19, 2021Aug 19, 2021

    • MouseLight_Microscope_Software

      Public
      Microscope Control Software
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •2•2•0•0•Updated May 18, 2021May 18, 2021

    • pipeline-descriptor

      Public
      DoG descriptor used in stitching pipeline
      Shell
      •2•0•0•0•Updated Mar 12, 2021Mar 12, 2021

    • common

      Public
      MATLAB
      •1•0•0•0•Updated Feb 12, 2021Feb 12, 2021

    • buildBrain

      Public
      MATLAB
      •2•0•0•0•Updated Aug 6, 2020Aug 6, 2020

    • pipeline-mergeh5

      Public
      Generates a single H5 file from a rendered probability image on which segmentation can be performed
      Shell
      •2•0•0•0•Updated May 18, 2020May 18, 2020

    • lineFix

      Public
      Python
      •1•0•0•0•Updated Apr 28, 2020Apr 28, 2020

    • lapwing

      Public
      Simple UI for browsing large stacks
      MATLAB
      •0•0•0•0•Updated Apr 2, 2020Apr 2, 2020

    • Analysis-Paper

      Public
      Analysis scripts for Winnubst et al. 2019
      MATLAB
      •2•6•0•0•Updated Oct 11, 2019Oct 11, 2019

    • MouseLight-Acquisition-Pipeline

      Public
      Docker Compose system for operating Pipeline services.
      Shell
      •
      Other
      •1•0•0•0•Updated Sep 6, 2019Sep 6, 2019

    • mouse2syglass

      Public
      Converts mouselight octree format to syglass tif
      MATLAB
      •2•0•0•0•Updated May 24, 2019May 24, 2019

    • pipeline-worker-client

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated May 3, 2019May 3, 2019

    • pipeline-worker-api

      Public
      TypeScript
      •
      Other
      •0•1•0•0•Updated May 3, 2019May 3, 2019

    • pipeline-scheduler

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated May 3, 2019May 3, 2019

    • pipeline-ui

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated May 3, 2019May 3, 2019

    • pipeline-api

      Public
      TypeScript
      •
      Other
      •0•0•0•0•Updated May 3, 2019May 3, 2019

    • pipeline-task-definitions

      Public
      Shell
      •0•0•0•0•Updated May 3, 2019May 3, 2019

    • MouseLight_Microscope_Hardware

      Public
      Microscope plans and parts
      Verilog
      •
      Other
      •3•0•0•0•Updated Apr 12, 2019Apr 12, 2019

    • mltk-bary

      Public
      Dependency of render: barycentric-transform
      C
      •1•0•2•0•Updated Mar 8, 2019Mar 8, 2019

    • pipeline-reconBrain

      Public
      MATLAB
      •2•0•0•0•Updated Dec 21, 2018Dec 21, 2018

    • compression

      Public
      routines used for (de)archiving tif files used for mouselight project.
      Shell
      •1•0•0•0•Updated Dec 20, 2018Dec 20, 2018