Repositories list

• MOSAIC

  Public
  HTML

  •

  Other

  •0•1•0•0•Updated Mar 26, 2026Mar 26, 2026

• Locat

  Public
  Locat

  Python

  •

  MIT License

  •1•0•1•0•Updated Mar 26, 2026Mar 26, 2026

• bipca

  Public
  Biwhitened PCA

  Jupyter Notebook

  •0•14•1•0•Updated Mar 18, 2026Mar 18, 2026

• bipca-experiment

  Public
  Python

  •0•0•0•0•Updated Mar 18, 2026Mar 18, 2026

• DiCoLo

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Feb 12, 2026Feb 12, 2026

• LocalizedMarkerDetector

  Public
  R

  •

  Other

  •0•1•1•0•Updated Feb 11, 2026Feb 11, 2026

• SORBET

  Public
  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

• Locat-paper

  Public
  Scripts and results used for the Locat paper

  MIT License

  •0•0•0•0•Updated Feb 10, 2026Feb 10, 2026

• ViralDetection

  Public
  This pipeline processes sequencing data to identify viral integrations.

  Shell

  •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

• DysonEqualizer

  Public
  Python

  •

  MIT License

  •0•1•1•0•Updated Oct 16, 2025Oct 16, 2025

• SIMVI

  Public
  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•15•0•0•Updated Jun 27, 2025Jun 27, 2025

• Y-SCORCH_manuscript

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 8, 2025Apr 8, 2025

• GeneTrajectory-python

  Public
  Python implementation of Gene Trajectory

  Jupyter Notebook

  •

  MIT License

  •2•30•3•0•Updated Sep 4, 2024Sep 4, 2024

• GeneTrajectory

  Public
  R implementation of GeneTrajectory

  R

  •9•68•14•0•Updated Apr 5, 2024Apr 5, 2024

• GeneTrajectory-paper

  Public
  0•0•0•0•Updated Apr 5, 2024Apr 5, 2024

• ALRA

  Public
  Imputation method for scRNA-seq based on low-rank approximation

  dropoutimputationscrna-seq+ 2

  dropoutimputationscrna-seqsvdmatrix-completion

  R

  •

  MIT License

  •23•78•19•1•Updated Dec 14, 2023Dec 14, 2023

• SpectralNet

  Public
  Deep network that performs spectral clustering

  Python

  •

  MIT License

  •103•330•14•0•Updated Feb 23, 2023Feb 23, 2023

• GTF

  Public
  0•0•0•0•Updated Jan 19, 2023Jan 19, 2023

• GT

  Public
  R

  •0•0•0•0•Updated Dec 19, 2022Dec 19, 2022

• stg

  Public
  Python

  •

  MIT License

  •24•1•0•0•Updated Feb 18, 2022Feb 18, 2022

• ALRA-paper

  Public
  R

  •6•9•1•0•Updated Oct 31, 2021Oct 31, 2021

• FIt-SNE

  Public
  Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

  visualizationbig-datat-sne+ 1

  visualizationbig-datat-snefast-algorithm

  C++

  •

  Other

  •111•609•18•2•Updated Sep 13, 2021Sep 13, 2021

• pyFIt-SNE

  Public
  Python Wrapper for FIt-SNE

  C++

  •

  Other

  •11•45•1•1•Updated May 11, 2021May 11, 2021

• DAseq

  Public
  R

  •

  MIT License

  •5•40•13•0•Updated Apr 5, 2021Apr 5, 2021

• DAseq-paper

  Public
  R

  •1•3•0•0•Updated Mar 12, 2021Mar 12, 2021

• Scripts_Roulis_et_al_2020

  Public
  R

  •1•1•1•0•Updated May 26, 2020May 26, 2020

• batchEffectRemoval2020

  Public
  Python

  •0•1•0•0•Updated Apr 16, 2020Apr 16, 2020

• RotationScheduler

  Public
  R

  •1•0•0•0•Updated Apr 13, 2020Apr 13, 2020

• Pembro-Brain-Met-Trial-Nanostring

  Public
  0•0•0•0•Updated Aug 14, 2019Aug 14, 2019

• rpca-mkl

  Public
  Implementation of randomized PCA using Intel MKL

  pcarandomized-algorithmintel-mkl-library

  pcarandomized-algorithmintel-mkl-library

  C++

  •0•2•4•0•Updated Jul 31, 2019Jul 31, 2019