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    10 repositories

    • hipct-reg

      Public
      Code to register HiP-CT volumes of interest to full organ datasets
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•6•Updated Jan 7, 2025Jan 7, 2025

    • stack-to-chunk

      Public
      Convert stacks of images to chunked datasets
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•5•2•4•Updated Jan 6, 2025Jan 6, 2025

    • rebin

      Public
      Re-bin stacks of JPEG2000 images to reduce their filesize and resolution
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•2•Updated Jan 6, 2025Jan 6, 2025

    • mask-ome-zarr

      Public
      A pipeline to apply a mask to an OME-zarr dataset
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • downsample-jp2s

      Public
      Script to create binned JPEG2000 datasets for HiP-CT data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Oct 15, 2024Oct 15, 2024

    • Kaggle_skeleton_analyses

      Public
      This is a repository for the Kaggle skeleton analysis pipeline
      MATLAB
      •0•0•0•0•Updated Aug 12, 2024Aug 12, 2024

    • contrast-lims

      Public
      Script for calculating contrast limits for HiP-CT datasets
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•1•0•Updated Aug 1, 2024Aug 1, 2024

    • .github

      Public
      0•0•0•0•Updated May 21, 2024May 21, 2024

    • data-speeds

      Public
      Comparing image file I/O
      Python
      •0•0•0•0•Updated Apr 6, 2024Apr 6, 2024

    • Tomo_Recon

      Public archive
      MATLAB
      •
      GNU General Public License v3.0
      •0•8•0•0•Updated Jul 6, 2023Jul 6, 2023