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    224 repositories

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •11•9•0•3•Updated Apr 14, 2026Apr 14, 2026

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •4•4•0•8•Updated Apr 14, 2026Apr 14, 2026

    • hprc-qc

      Public
      Perl
      •
      Apache License 2.0
      •1•2•3•1•Updated Apr 14, 2026Apr 14, 2026

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •6•2•0•2•Updated Apr 14, 2026Apr 14, 2026

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •2•3•0•10•Updated Apr 13, 2026Apr 13, 2026

    • distiller

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Apr 13, 2026Apr 13, 2026

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •5•16•0•3•Updated Apr 13, 2026Apr 13, 2026

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •52•22•0•3•Updated Apr 13, 2026Apr 13, 2026

    • ensembl-web-metadata-api

      Public
      Metadata API for beta.ensembl.org
      Python
      •
      Apache License 2.0
      •1•0•1•1•Updated Apr 13, 2026Apr 13, 2026

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •178•543•67•6•Updated Apr 13, 2026Apr 13, 2026

    • ensembl-elements

      Public
      Ensembl shared elements
      TypeScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 10, 2026Apr 10, 2026

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformatics
      mysqlapibioinformaticsdatabaseperlensemblcomparative-genomics
      Perl
      •
      Apache License 2.0
      •69•55•0•3•Updated Apr 10, 2026Apr 10, 2026

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •48•9•0•3•Updated Apr 10, 2026Apr 10, 2026

    • ensembl-datacheck-py

      Public
      Python
      •
      Apache License 2.0
      •4•2•0•4•Updated Apr 10, 2026Apr 10, 2026

    • nextflow_modules

      Public
      A collection of shared Ensembl modules used in NextFlow pipelines
      Nextflow
      •3•3•1•3•Updated Apr 10, 2026Apr 10, 2026

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•2•0•3•Updated Apr 10, 2026Apr 10, 2026

    • ensembl-dauphin-style-compiler

      Public
      "dauphin" style-compiler for genome browser
      Rust
      •0•0•10•1•Updated Apr 9, 2026Apr 9, 2026

    • ensembl-refget

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Apr 9, 2026Apr 9, 2026

    • ensembl-io

      Public
      File parsing and writing code for Ensembl
      Perl
      •
      Apache License 2.0
      •19•10•0•1•Updated Apr 9, 2026Apr 9, 2026

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •45•13•0•4•Updated Apr 9, 2026Apr 9, 2026

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •59•30•0•15•Updated Apr 9, 2026Apr 9, 2026

    • ensembl-website-help-and-docs

      Public
      documentation for the new Ensembl site
      TypeScript
      •6•1•0•4•Updated Apr 7, 2026Apr 7, 2026

    • ensembl-anno

      Public
      Python
      •
      Apache License 2.0
      •7•11•1•3•Updated Apr 7, 2026Apr 7, 2026

    • ensembl

      Public
      The Ensembl Core Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •78•83•2•2•Updated Apr 7, 2026Apr 7, 2026

    • ensembl-rest

      Public
      Language agnostic RESTful data access to Ensembl data over HTTP
      Perl
      •
      Apache License 2.0
      •62•150•7•0•Updated Apr 7, 2026Apr 7, 2026

    • tagene

      Public
      Repository hosting the TAGENE annotation pipeline
      Perl
      •
      Apache License 2.0
      •1•2•0•0•Updated Apr 6, 2026Apr 6, 2026

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •28•5•0•0•Updated Apr 1, 2026Apr 1, 2026

    • ensembl-genes-metadata

      Public
      1•3•2•2•Updated Mar 31, 2026Mar 31, 2026

    • airflow-providers-ensemblslurm

      Public
      Airflow operators to submit and monitor the slurm jobs
      Python
      •
      Apache License 2.0
      •1•0•0•1•Updated Mar 30, 2026Mar 30, 2026

    • ensembl-variation-pipelines

      Public
      Python
      •
      Apache License 2.0
      •4•0•0•4•Updated Mar 24, 2026Mar 24, 2026
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