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    19 repositories

    • genomeqc

      Public
      Compare the quality of multiple genomes, along with their annotations.
      Nextflow
      •
      MIT License
      •16•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • excon

      Public
      A pipeline to measure gene family expansion and contraction
      Perl
      •
      MIT License
      •1•4•15•1•Updated Dec 7, 2025Dec 7, 2025

    • modules

      Public
      Repository to host tool-specific module files for the Nextflow DSL2 community!
      Nextflow
      •
      MIT License
      •951•0•0•0•Updated Nov 26, 2025Nov 26, 2025

    • docker-build

      Public
      A repository containing Dockerfiles for containers used within Eco-Flow's Nextflow pipelines.
      Dockerfile
      •
      MIT License
      •0•1•0•0•Updated Nov 8, 2025Nov 8, 2025

    • configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •339•0•0•0•Updated Oct 23, 2025Oct 23, 2025

    • .github

      Public
      Files for Eco-flow Github
      0•0•0•0•Updated Oct 19, 2025Oct 19, 2025

    • Eco-Flow.github.io

      Public
      Eco-Flow webpage
      SCSS
      •2•4•0•0•Updated Oct 17, 2025Oct 17, 2025

    • buscophylo

      Public
      Create phylogeny from busco orthologs
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jul 15, 2025Jul 15, 2025

    • synteny

      Public
      A Nextflow pipeline for running synteny analysis.
      Perl
      •
      Other
      •4•16•18•0•Updated Jun 17, 2025Jun 17, 2025

    • gwas

      Public
      UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
      Nextflow
      •
      MIT License
      •25•0•0•0•Updated May 23, 2025May 23, 2025

    • website

      Public
      Code and files for the main nf-core website.
      MDX
      •
      MIT License
      •253•0•0•0•Updated May 2, 2025May 2, 2025

    • go_randomisation_test

      Public
      A script to check if the GO terms are randomly enriched by chance
      Perl
      •
      MIT License
      •0•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • training

      Public
      A repository to run training courses
      Nextflow
      •
      MIT License
      •1•3•3•0•Updated Mar 18, 2025Mar 18, 2025

    • test-datasets

      Public
      Test data to be used for automated testing with the nf-core pipelines
      MIT License
      •449•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • pollen-metabarcoding

      Public
      A pipeline developled in collaboration with Exeter University
      Nextflow
      •0•1•6•0•Updated Aug 30, 2024Aug 30, 2024

    • comparete

      Public
      A pipeline to compare TE content across genomes
      Perl
      •
      MIT License
      •0•0•6•0•Updated Aug 25, 2024Aug 25, 2024

    • pipeline-discussions

      Public
      A repository where each issue is a request to implement a specific pipeline
      0•0•1•0•Updated May 15, 2024May 15, 2024

    • Eco-Flow_configs

      Public
      A repository to store config files set up for specific HPCs.
      1•1•0•0•Updated Mar 15, 2024Mar 15, 2024

    • Eco-Flow

      Public
      0•0•1•0•Updated Jan 9, 2024Jan 9, 2024