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Allow root model to include phloem as a node and pass the result concentration to the shoot model #35

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Merged
GeraultTr merged 1 commit into from
Jul 23, 2026
Merged

Allow root model to include phloem as a node and pass the result concentration to the shoot model #35

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31 changes: 8 additions & 23 deletions src/openalea/fspmwheat/cnwheat_composite.py
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Original file line number Diff line number Diff line change
Expand Up @@ -38,15 +38,12 @@ class WheatFSPM(Model):
Export_Amino_Acids: float = declare(default=0., unit="umol.h-1", unit_comment="of N",
min_value="", max_value="", description="", value_comment="", references="", DOI="",
variable_type="input", by="root_nitrogen", state_variable_type="extensive", edit_by="user")
Unloading_Sucrose_phloem: float = declare(default=0.1, unit="umol.h-1", unit_comment="of C",
min_value="", max_value="", description="", value_comment="", references="", DOI="",
variable_type="input", by="root_nitrogen", state_variable_type="extensive", edit_by="user")
Unloading_Amino_Acids_phloem: float = declare(default=0.1, unit="umol.h-1", unit_comment="of N",
min_value="", max_value="", description="", value_comment="", references="", DOI="",
variable_type="input", by="root_nitrogen", state_variable_type="extensive", edit_by="user")
sucrose: float = declare(default=0., unit="umol of C", unit_comment="amount in equivalent C",
sucrose_phloem_outside_solve: float = declare(default=10., unit="µmol of C", unit_comment="amount in equivalent C",
min_value="", max_value="", description="", value_comment="", references="", DOI="",
variable_type="input", by="root_carbon", state_variable_type="extensive", edit_by="user")
amino_acids_phloem_outside_solve: float = declare(default=1., unit="µmol of N", unit_comment="amount in equivalent N",
min_value="", max_value="", description="", value_comment="", references="", DOI="",
variable_type="input", by="root_nitrogen", state_variable_type="extensive", edit_by="user")
cytokinins: float = declare(default=0., unit="AU", unit_comment="",
min_value="", max_value="", description="", value_comment="", references="", DOI="",
variable_type="input", by="root_nitrogen", state_variable_type="extensive", edit_by="user")
Expand All @@ -67,12 +64,6 @@ class WheatFSPM(Model):
amino_acids_phloem: float = declare(default=1, unit="µmol", unit_comment="of N",
min_value="", max_value="", description="", value_comment="", references="", DOI="",
variable_type="state_variable", by="model_shoot", state_variable_type="extensive", edit_by="user")
Unloading_Sucrose: float = declare(default=30., unit="umol.h-1", unit_comment="of equivalent C mol? sucrose",
min_value="", max_value="", description="", value_comment="", references="", DOI="",
variable_type="state_variable", by="model_shoot", state_variable_type="extensive", edit_by="user")
Unloading_Amino_Acids: float = declare(default=1., unit="umol.h-1", unit_comment="of amino acids",
min_value="", max_value="", description="", value_comment="", references="", DOI="",
variable_type="state_variable", by="model_shoot", state_variable_type="extensive", edit_by="user")
Export_cytokinins: float = declare(default=0., unit="AU.h-1", unit_comment="of cytokinins",
min_value="", max_value="", description="", value_comment="", references="", DOI="",
variable_type="state_variable", by="model_shoot", state_variable_type="extensive", edit_by="user")
Expand Down Expand Up @@ -347,8 +338,6 @@ def __init__(self, root_mtg, meteo, inputs_dataframes,
self.cn_wheat_root_props = self.g.get_vertex_property(2)["roots"]

# TODO : Temporary
self.cn_wheat_root_props["Unloading_Sucrose"] = self.props["Unloading_Sucrose"][1]
self.cn_wheat_root_props["Unloading_Amino_Acids"] = self.props["Unloading_Amino_Acids"][1]
self.g.properties()["Total_Transpiration"][2] = self.props["Total_Transpiration"][1]

self.g.get_vertex_property(2)['phloem']['sucrose'] = self.props["sucrose_phloem"][1]
Expand Down Expand Up @@ -388,14 +377,10 @@ def __init__(self, root_mtg, meteo, inputs_dataframes,

def sync_shoot_inputs_with_shoot_mtg(self):
for name in self.inputs:
if name == "Unloading_Sucrose_phloem":
print(self.props['mstruct'][1])
print('result', self.cn_wheat_root_props['Unloading_Sucrose'])
self.cn_wheat_root_props["Unloading_Sucrose"] = self.props[name][1] / self.props['mstruct'][1]

elif name == "Unloading_Amino_Acids_phloem":
self.cn_wheat_root_props["Unloading_Amino_Acids"] = self.props[name][1] / self.props['mstruct'][1]

if name == 'sucrose_phloem_outside_solve':
self.g.get_vertex_property(2)['phloem']['sucrose'] == self.props[name][1]
elif name == 'amino_acids_phloem_outside_solve':
self.g.get_vertex_property(2)['phloem']['amino_acids'] == self.props[name][1]
else:
self.cn_wheat_root_props[name] = self.props[name][1]

Expand Down
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