rbarillot · Jul 8, 2026 · Jul 8, 2026 · Jul 8, 2026
diff --git a/README.md b/README.md
@@ -73,12 +73,12 @@ Full documentation of each submodule is available at https://cnwgrass.readthedoc
 ## Prerequisites
 *CNW-Grass* has the following dependencies, which are automatically installed (see [Installing](#installing)):
 
-    * [openalea.MTG](https://github.com/openalea/mtg)
-    * [openalea.Plantgl](https://github.com/openalea/plantgl)
-    * [openalea.Lpy](https://github.com/openalea/lpy)
-    * [openalea.Caribu](https://github.com/openalea/caribu) 
-    * [openalea.Adel](https://github.com/openalea/adel)
-    * [openalea.Astk](https://github.com/openalea/astk)
+* [openalea.MTG](https://github.com/openalea/mtg)
+* [openalea.Plantgl](https://github.com/openalea/plantgl)
+* [openalea.Lpy](https://github.com/openalea/lpy)
+* [openalea.Caribu](https://github.com/openalea/caribu) 
+* [openalea.Adel](https://github.com/openalea/adel)
+* [openalea.Astk](https://github.com/openalea/astk)
 
 ## Installing
 For general information about OpenAlea installation, see https://openalea.readthedocs.io/en/latest/install.html 

diff --git a/example/NEMA/NEMA_H0/inputs/cnmetabolism/SAM_inputs.csv b/example/NEMA/NEMA_H0/inputs/cnmetabolism/SAM_inputs.csv
@@ -0,0 +1,2 @@
+plant,axis,status,nb_leaves,GA,height,SAM_temperature,delta_teq,delta_teq_roots,teq_since_primordium,sum_TT,cohort,mstruct
+1,MS,reproductive,12,True,120,20,3600,3600,0,0,1,2.074
diff --git a/example/NEMA/NEMA_H0/main.py b/example/NEMA/NEMA_H0/main.py
diff --git a/example/NEMA/NEMA_H15/inputs/cnmetabolism/SAM_inputs.csv b/example/NEMA/NEMA_H15/inputs/cnmetabolism/SAM_inputs.csv
@@ -0,0 +1,2 @@
+plant,axis,status,nb_leaves,GA,height,SAM_temperature,delta_teq,delta_teq_roots,teq_since_primordium,sum_TT,cohort,mstruct
+1,MS,reproductive,12,True,120,20,3600,3600,0,0,1,2.074
diff --git a/example/NEMA/NEMA_H15/main.py b/example/NEMA/NEMA_H15/main.py
diff --git a/example/NEMA/NEMA_H3/inputs/cnmetabolism/SAM_inputs.csv b/example/NEMA/NEMA_H3/inputs/cnmetabolism/SAM_inputs.csv
@@ -0,0 +1,2 @@
+plant,axis,status,nb_leaves,GA,height,SAM_temperature,delta_teq,delta_teq_roots,teq_since_primordium,sum_TT,cohort,mstruct
+1,MS,reproductive,12,True,120,20,3600,3600,0,0,1,2.074
diff --git a/example/NEMA/NEMA_H3/main.py b/example/NEMA/NEMA_H3/main.py
diff --git a/src/openalea/cnwgrass/integration/build_outputs.py b/src/openalea/cnwgrass/integration/build_outputs.py
@@ -83,11 +83,13 @@ def _read_outputs_on_MTG(self):
             # Axis scale
             for mtg_axis_vid in self._shared_mtg.components_iter(mtg_plant_vid):
                 mtg_axis_label = self._shared_mtg.label(mtg_axis_vid)
+                if isinstance(mtg_axis_label, bytes):
+                    mtg_axis_label = mtg_axis_label.decode('utf-8')
                 mtg_axis_properties = self._shared_mtg.get_vertex_property(mtg_axis_vid)
                 axis_id = (mtg_plant_index, mtg_axis_label)
                 axis_dict = {}
 
-                if mtg_axis_properties.get('nb_leaves') is None:
+                if '.' in mtg_axis_label: # todo: temporary, used to filter secondary tillers
                     continue
                 for axis_run_variable in AXES_VARIABLES:
                     if axis_run_variable in mtg_axis_properties:
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		plant,axis,status,nb_leaves,GA,height,SAM_temperature,delta_teq,delta_teq_roots,teq_since_primordium,sum_TT,cohort,mstruct
		1,MS,reproductive,12,True,120,20,3600,3600,0,0,1,2.074