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Add Swanson atlas v3 #30

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9 changes: 9 additions & 0 deletions instances/latest/ISBN/SwansonBM_3rd-ed_ISBN.jsonld
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@@ -0,0 +1,9 @@
{
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},
"@id": "https://openminds.ebrains.eu/instances/ISBN/SwansonBM_3rd-ed",
"@type": "https://openminds.ebrains.eu/core/ISBN",
"identifier": "0-126-10582-0"
}

3,545 changes: 3,545 additions & 0 deletions instances/latest/brainAtlasVersions/SwansonBMA/SwansonBM_3rd-ed.jsonld

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3,512 changes: 3,512 additions & 0 deletions instances/latest/brainAtlases/SwansonBMA.jsonld

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Original file line number Diff line number Diff line change
@@ -0,0 +1,92 @@
{
"@context": {
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},
"@id": "https://openminds.ebrains.eu/instances/commonCoordinateSpaceVersion/SwansonSB-Bregma_1st-ed",
"@type": "https://openminds.ebrains.eu/core/CommonCoordinateSpaceVersion",
"abbreviation": "SwansonSB-Bregma",
"accessibility": [
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],
"anatomicalAxesOrientation": [
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"axesOrigin": [
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"unit": [
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"unit": [
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"value": 12
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"unit": [
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],
"value": 8.11
}
],
"copyright": null,
"custodian": null,
"defaultImage": null,
"description": "The coordinate space of Swanson's Brain Maps Atlases with Bregma as its origin.",
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"releaseDate": "1992-12-24",
"repository": null,
"shortName": "Swanson's Stereotactic Brain (Bregma)",
"supportChannel": null,
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"versionIdentifier": "1st ed.",
"versionInnovation": "This is the first version of this common coordinate space."
}

28 changes: 28 additions & 0 deletions instances/latest/commonCoordinateSpaces/SwansonSB.jsonld
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
{
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"@type": "https://openminds.ebrains.eu/core/CommonCoordinateSpace",
"abbreviation": "SwansonSB",
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"description": "Stereotactic coordinate system derived from the atlas by Paxinos and Watson (1986; ISBN: 0-12-547621-3).",
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"fullName": "Swanson's Stereotactic Brain",
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Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
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"@id": "https://openminds.ebrains.eu/instances/parcellationEntity/SwansonBMA_abducensNerveEustachius",
"@type": "https://openminds.ebrains.eu/sands/ParcellationEntity",
"abbreviation": "VIn",
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"lookupLabel": "SwansonBMA_abducensNerveEustachius",
"name": "abducens nerve [Eustachius]",
"ontologyIdentifier": null,
"relatedUBERONTerm": null
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Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
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"@id": "https://openminds.ebrains.eu/instances/parcellationEntity/SwansonBMA_abducensNucleus",
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"abbreviation": "VI",
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"lookupLabel": "SwansonBMA_abducensNucleus",
"name": "abducens nucleus",
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"relatedUBERONTerm": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
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"@id": "https://openminds.ebrains.eu/instances/parcellationEntity/SwansonBMA_accessoryAbducensNucleus",
"@type": "https://openminds.ebrains.eu/sands/ParcellationEntity",
"abbreviation": "ACVI",
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}
],
"lookupLabel": "SwansonBMA_accessoryAbducensNucleus",
"name": "accessory abducens nucleus",
"ontologyIdentifier": null,
"relatedUBERONTerm": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
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"@id": "https://openminds.ebrains.eu/instances/parcellationEntity/SwansonBMA_accessoryFacialNucleus",
"@type": "https://openminds.ebrains.eu/sands/ParcellationEntity",
"abbreviation": "ACVII",
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}
],
"lookupLabel": "SwansonBMA_accessoryFacialNucleus",
"name": "accessory facial nucleus",
"ontologyIdentifier": null,
"relatedUBERONTerm": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
},
"@id": "https://openminds.ebrains.eu/instances/parcellationEntity/SwansonBMA_accessoryOlfactoryBulbBalogh",
"@type": "https://openminds.ebrains.eu/sands/ParcellationEntity",
"abbreviation": "AOB",
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],
"lookupLabel": "SwansonBMA_accessoryOlfactoryBulbBalogh",
"name": "accessory olfactory bulb [Balogh]",
"ontologyIdentifier": null,
"relatedUBERONTerm": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
},
"@id": "https://openminds.ebrains.eu/instances/parcellationEntity/SwansonBMA_accessoryOlfactoryBulbGlomerularLayer",
"@type": "https://openminds.ebrains.eu/sands/ParcellationEntity",
"abbreviation": "AOBgl",
"alternateName": null,
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}
],
"lookupLabel": "SwansonBMA_accessoryOlfactoryBulbGlomerularLayer",
"name": "accessory olfactory bulb, glomerular layer",
"ontologyIdentifier": null,
"relatedUBERONTerm": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"@context": {
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},
"@id": "https://openminds.ebrains.eu/instances/parcellationEntity/SwansonBMA_accessoryOlfactoryBulbGranuleCellLayer",
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"abbreviation": "AOBgr",
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}
],
"lookupLabel": "SwansonBMA_accessoryOlfactoryBulbGranuleCellLayer",
"name": "accessory olfactory bulb, granule cell layer",
"ontologyIdentifier": null,
"relatedUBERONTerm": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
},
"@id": "https://openminds.ebrains.eu/instances/parcellationEntity/SwansonBMA_accessoryOlfactoryBulbMitralLayer",
"@type": "https://openminds.ebrains.eu/sands/ParcellationEntity",
"abbreviation": "AOBmi",
"alternateName": null,
"definition": null,
"hasParent": null,
"hasVersion": [
{
"@id": "https://openminds.ebrains.eu/instances/parcellationEntityVersion/SwansonBM_3rd-ed_accessoryOlfactoryBulbMitralLayer"
}
],
"lookupLabel": "SwansonBMA_accessoryOlfactoryBulbMitralLayer",
"name": "accessory olfactory bulb, mitral layer",
"ontologyIdentifier": null,
"relatedUBERONTerm": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
},
"@id": "https://openminds.ebrains.eu/instances/parcellationEntity/SwansonBMA_accessoryOlfactoryNerve",
"@type": "https://openminds.ebrains.eu/sands/ParcellationEntity",
"abbreviation": "aIn",
"alternateName": null,
"definition": null,
"hasParent": null,
"hasVersion": [
{
"@id": "https://openminds.ebrains.eu/instances/parcellationEntityVersion/SwansonBM_3rd-ed_accessoryOlfactoryNerve"
}
],
"lookupLabel": "SwansonBMA_accessoryOlfactoryNerve",
"name": "accessory olfactory nerve",
"ontologyIdentifier": null,
"relatedUBERONTerm": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
},
"@id": "https://openminds.ebrains.eu/instances/parcellationEntity/SwansonBMA_accessoryOlfactoryTract",
"@type": "https://openminds.ebrains.eu/sands/ParcellationEntity",
"abbreviation": "aolt",
"alternateName": null,
"definition": null,
"hasParent": null,
"hasVersion": [
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}
],
"lookupLabel": "SwansonBMA_accessoryOlfactoryTract",
"name": "accessory olfactory tract",
"ontologyIdentifier": null,
"relatedUBERONTerm": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
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"@vocab": "https://openminds.ebrains.eu/vocab/"
},
"@id": "https://openminds.ebrains.eu/instances/parcellationEntity/SwansonBMA_accessoryOpticTract",
"@type": "https://openminds.ebrains.eu/sands/ParcellationEntity",
"abbreviation": "aot",
"alternateName": null,
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}
],
"lookupLabel": "SwansonBMA_accessoryOpticTract",
"name": "accessory optic tract",
"ontologyIdentifier": null,
"relatedUBERONTerm": null
}

Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
{
"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
},
"@id": "https://openminds.ebrains.eu/instances/parcellationEntity/SwansonBMA_accessorySpinalNerveWillis",
"@type": "https://openminds.ebrains.eu/sands/ParcellationEntity",
"abbreviation": "XIn",
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}
],
"lookupLabel": "SwansonBMA_accessorySpinalNerveWillis",
"name": "accessory spinal nerve [Willis]",
"ontologyIdentifier": null,
"relatedUBERONTerm": null
}

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