openMetadataInitiative · UlrikeS91 · Jan 18, 2025
diff --git a/instances/latest/terminologies/UBERONParcellation/hypothalamus.jsonld b/instances/latest/terminologies/UBERONParcellation/hypothalamus.jsonld
@@ -4,17 +4,15 @@
   },
   "@id": "https://openminds.om-i.org/instances/UBERONParcellation/hypothalamus",
   "@type": "https://openminds.om-i.org/types/UBERONParcellation",
-  "definition": "'Hypothalamus' is a regional part of brain. It is part of the limbic system and thalamic complex.",
-  "description": "Ventral part of the diencephalon extending from the region of the optic chiasm to the caudal border of the mammillary bodies and forming the inferior and lateral walls of the third ventricle.The ventral topographic division of the interbrain. The first adequate description of the hypothalamus as a layer of gray matter surrounding the lower half of the third ventricle (Galen, c173) was provided by Wharton (1656, see 1966 translation, p. 170). His (1893, pp. 159-162) introduced the term but assigned the preoptic region (Swanson, 1976, pp. 229-235) of the hypothalamus to the telencephalon (His, 1893b). The definition here was introduced for vertebrates by Kuhlenbeck (1927, p. 67, Ch. 9).",
+  "definition": "Is a regional part of brain. Is part of the limbic system and the thalamic complex. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001898) ('is_a' and 'relationship')]",
+  "description": "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001898)]",
   "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105177",
   "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001898#hypothalamus-1",
   "name": "hypothalamus",
   "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001898",
   "synonym": [
-    "Hy",
-    "Hypencephalon",
-    "Preoptico-hypothalamic area",
-    "Preoptico-hypothalamic region",
-    "hypothalamus"
+    "preoptico-hypothalamic area",
+    "preoptico-hypothalamic region"
   ]
 }
+
diff --git a/instances/latest/terminologies/UBERONParcellation/induseumGriseum.jsonld b/instances/latest/terminologies/UBERONParcellation/induseumGriseum.jsonld
@@ -4,22 +4,14 @@
   },
   "@id": "https://openminds.om-i.org/instances/UBERONParcellation/induseumGriseum",
   "@type": "https://openminds.om-i.org/types/UBERONParcellation",
-  "definition": "'Induseum griseum' is a white matter of limbic lobe and stria of telencephalon. It is part of the hippocampal formation and supracallosal gyrus.",
-  "description": "Thin layer of cortex lying on the dorsal surface of the corpus callosum.  It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed)",
+  "definition": "Is a white matter of limbic lobe and stria of telencephalon. Is part of the hippocampal formation and the supracallosal gyrus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015793) ('is_a' and 'relationship')]",
+  "description": "Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0015793)]",
   "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105421",
   "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0015793#induseum-griseum",
   "name": "induseum griseum",
   "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0015793",
   "synonym": [
-    "dorsal hippocampal continuation",
-    "gray stria of Lancisi",
-    "gyrus epicallosus",
-    "gyrus indusium griseum",
-    "IG",
-    "indusium griseum",
-    "superior part of intralimbic gyrus",
-    "superior segment of intralimbic gyrus",
-    "supracallosal gyrus",
-    "supracommissural hippocampus"
+    "indusium griseum"
   ]
 }
+
diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorColliculus.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorColliculus.jsonld
@@ -4,22 +4,16 @@
   },
   "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorColliculus",
   "@type": "https://openminds.om-i.org/types/UBERONParcellation",
-  "definition": "'Inferior colliculus' is a regional part of brain. It is part of the corpora quadrigemina.",
-  "description": "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum.  According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM).",
+  "definition": "Is a regional part of brain. Is part of the corpora quadrigemina. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001946) ('is_a' and 'relationship')]",
+  "description": "Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM). [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0001946)]",
   "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105436",
   "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0001946#inferior-colliculus-1",
   "name": "inferior colliculus",
   "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0001946",
   "synonym": [
     "caudal colliculus",
-    "colliculus caudalis",
-    "colliculus inferior",
-    "corpus bigeminalis caudalis",
-    "corpus bigeminum posterioris",
-    "corpus quadrigeminum inferius",
-    "IC",
-    "inferior colliculi",
     "posterior colliculus",
     "posterior corpus quadrigeminum"
   ]
 }
+
diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorLongitudinalFasciculus.jsonld
@@ -4,15 +4,12 @@
   },
   "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorLongitudinalFasciculus",
   "@type": "https://openminds.om-i.org/types/UBERONParcellation",
-  "definition": "",
-  "description": "The 'inferior longitudinal fasciculus' is a white matter fibre bundle. It is a cerebral nerve fasciculus, connecting the temporal and occipital lobe.",
+  "definition": "Is a cerebral nerve fasciculus. Is part of the white matter of telencephalon and the forebrain ipsilateral fiber tracts. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034743) ('is_a' and 'relationship')]",
+  "description": null,
   "interlexIdentifier": "http://uri.interlex.org/base/ilx_0724061",
   "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034743#inferior-longitudinal-fasciculus",
   "name": "inferior longitudinal fasciculus",
   "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034743",
-  "synonym": [
-    "external sagittal stratum",
-    "fasciculus longitudinalis inferior",
-    "ilf"
-  ]
+  "synonym": null
 }
+
diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorOccipitofrontalFasciculus.jsonld
@@ -4,15 +4,14 @@
   },
   "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorOccipitofrontalFasciculus",
   "@type": "https://openminds.om-i.org/types/UBERONParcellation",
-  "definition": "",
-  "description": "The 'inferior occipitofrontal fasciculus' is a white matter fibre bundle. It is the inferior part of the occipitofrontal fasciculus.",
+  "definition": "Is an occipitofrontal fasciculus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0034753)]",
+  "description": null,
   "interlexIdentifier": "http://uri.interlex.org/base/ilx_0731728",
   "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0034753#inferior-occipitofrontal-fasciculus",
   "name": "inferior occipitofrontal fasciculus",
   "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0034753",
   "synonym": [
-    "fasciculus occipito-frontalis inferior",
-    "fasciculus occipitofrontalis inferior",
-    "inferior fronto-occipital fasciculus"
+    "inferior occipitofrontal fasciculus"
   ]
 }
+
diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorOlivaryComplex.jsonld
@@ -4,26 +4,16 @@
   },
   "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorOlivaryComplex",
   "@type": "https://openminds.om-i.org/types/UBERONParcellation",
-  "definition": "'Inferior olivary complex' is a nuclear complex of neuraxis and gray matter of hindbrain. It is part of the olivary body.",
-  "description": "Largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements.",
+  "definition": "Is a nuclear complex of neuraxis and gray matter of hindbrain. Is part of the olivary body. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002127) ('is_a' and 'relationship')]",
+  "description": "Largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002127)]",
   "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105448",
   "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002127#inferior-olivary-complex-1",
   "name": "inferior olivary complex",
   "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002127",
   "synonym": [
-    "caudal olivary nuclei",
-    "complexus olivaris inferior",
-    "complexus olivaris inferior; nuclei olivares inferiores",
-    "inferior olivary complex (Vieussens)",
     "inferior olivary nuclear complex",
-    "inferior olivary nuclei",
-    "inferior olivary nucleus",
     "inferior olive",
-    "nuclei olivares caudales",
-    "nuclei olivares inferiores",
-    "nucleus olivaris caudalis",
-    "nucleus olivaris inferior",
-    "oliva",
-    "regio olivaris inferior"
+    "oliva"
   ]
 }
+
diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorPetrosalSinus.jsonld
@@ -0,0 +1,17 @@
+{
+  "@context": {
+    "@vocab": "https://openminds.om-i.org/props/"
+  },
+  "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorPetrosalSinus",
+  "@type": "https://openminds.om-i.org/types/UBERONParcellation",
+  "definition": "Is a paired venous dural sinus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007160)]",
+  "description": "The inferior petrosal sinus, within the human head, is an area beneath the brain, which allows blood veins to span the area, from the center of the head downward. It drains from the cavernous sinus (beneath the brain) to the sigmoid sinuses above the internal jugular vein. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007160)]",
+  "interlexIdentifier": null,
+  "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007160#inferior-petrosal-sinus",
+  "name": "inferior petrosal sinus",
+  "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007160",
+  "synonym": [
+    "sinus petrosal inferior"
+  ]
+}
+
diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorReticularFormation.jsonld
@@ -0,0 +1,15 @@
+{
+  "@context": {
+    "@vocab": "https://openminds.om-i.org/props/"
+  },
+  "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorReticularFormation",
+  "@type": "https://openminds.om-i.org/types/UBERONParcellation",
+  "definition": "Is a nucleus of medulla oblongata. Is part of the medial column. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_2000523) ('is_a' and 'relationship')]",
+  "description": null,
+  "interlexIdentifier": null,
+  "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:2000523#inferior-reticular-formation",
+  "name": "inferior reticular formation",
+  "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_2000523",
+  "synonym": null
+}
+
diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorSagittalSinus.jsonld
@@ -0,0 +1,15 @@
+{
+  "@context": {
+    "@vocab": "https://openminds.om-i.org/props/"
+  },
+  "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorSagittalSinus",
+  "@type": "https://openminds.om-i.org/types/UBERONParcellation",
+  "definition": "Is a sagittal sinus. Is part of the tentorial sinus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007152) ('is_a' and 'relationship')]",
+  "description": "An intracranial venous sinus that lies in a midline location along the lower free border of the falx cerebri of the brain. The sinus receives blood from the great cerebral vein and joins the superior sagittal sinus posteriorly. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0007152)]",
+  "interlexIdentifier": null,
+  "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0007152#inferior-sagittal-sinus",
+  "name": "inferior sagittal sinus",
+  "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0007152",
+  "synonym": null
+}
+
diff --git a/instances/latest/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld b/instances/latest/terminologies/UBERONParcellation/inferiorThalamicPeduncle.jsonld
@@ -0,0 +1,23 @@
+{
+  "@context": {
+    "@vocab": "https://openminds.om-i.org/props/"
+  },
+  "@id": "https://openminds.om-i.org/instances/UBERONParcellation/inferiorThalamicPeduncle",
+  "@type": "https://openminds.om-i.org/types/UBERONParcellation",
+  "definition": "Is a peduncle of thalamus. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0022242)]",
+  "description": null,
+  "interlexIdentifier": null,
+  "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0022242#inferior-thalamic-peduncle",
+  "name": "inferior thalamic peduncle",
+  "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0022242",
+  "synonym": [
+    "inferior peduncle",
+    "pedunculus inferior thalami",
+    "pedunculus thalami caudalis",
+    "pedunculus thalami inferior",
+    "pedunculus thalamicus inferior",
+    "temporal peduncle",
+    "temporal thalamic peduncle"
+  ]
+}
+
diff --git a/instances/latest/terminologies/UBERONParcellation/insula.jsonld b/instances/latest/terminologies/UBERONParcellation/insula.jsonld
@@ -4,28 +4,21 @@
   },
   "@id": "https://openminds.om-i.org/instances/UBERONParcellation/insula",
   "@type": "https://openminds.om-i.org/types/UBERONParcellation",
-  "definition": "Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16.",
-  "description": "'Insula' is a cerebral hemisphere gray matter. It is part of the cerebral cortex.",
+  "definition": "Is a cerebral hemisphere gray matter. Is part of the cerebral cortex. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002022) ('is_a' and 'relationship')]",
+  "description": "Gray matter of the insular region of the neocortex. In gyrencephalic animals, it is part of the insular lobe and lies in the depths of the lateral fissure and covered by portions of the frontal, parietal and temporal lobes. It includes Brodmann areas 13-16. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002022)]",
   "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105519",
   "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002022#insula-1",
   "name": "insula",
   "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002022",
   "synonym": [
     "central lobe",
-    "cortex insularis",
     "cortex of island",
-    "iNS",
-    "insula cerebri",
     "insula lobule",
-    "insula of Reil",
-    "insula Reilii",
-    "insular cortex",
-    "insular gyrus",
+    "insular lobe",
     "insular lobe",
     "insular region",
-    "insulary cortex",
     "island of Reil",
-    "lobus insularis",
-    "morphological insula"
+    "lobus insularis"
   ]
 }
+
diff --git a/...rminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld b/...rminologies/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex.jsonld
@@ -4,16 +4,12 @@
   },
   "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intergeniculateLeafletOfTheLateralGeniculateComplex",
   "@type": "https://openminds.om-i.org/types/UBERONParcellation",
-  "definition": "'Intergeniculate leaflet of the lateral geniculate complex' is a regional part of brain. It is part of the lateral geniculate body.",
-  "description": "",
+  "definition": "Is a regional part of brain. Is part of the lateral geniculate body. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0035975) ('is_a' and 'relationship')]",
+  "description": null,
   "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105563",
   "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0035975#intergeniculate-leaflet-of-the-lateral-geniculate-complex",
   "name": "intergeniculate leaflet of the lateral geniculate complex",
   "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0035975",
-  "synonym": [
-    "IGL",
-    "intergeniculate leaflet",
-    "intergeniculate leaflet of the lateral geniculate complex",
-    "lateral geniculate complex"
-  ]
+  "synonym": null
 }
+
diff --git a/instances/latest/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld b/instances/latest/terminologies/UBERONParcellation/intermediateAcousticStria.jsonld
@@ -4,16 +4,16 @@
   },
   "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intermediateAcousticStria",
   "@type": "https://openminds.om-i.org/types/UBERONParcellation",
-  "definition": "'Intermediate acoustic stria' is a stria of neuraxis and white matter of pontine tegmentum.",
-  "description": "White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609)",
+  "definition": "Is a stria of neuraxis and white matter of pontine tegmentum. [auto-generated from 'is_a' property of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002952)]",
+  "description": "White matter structure containing axons arising from cochlear nuclear complex (Brodal, Neurological Anatomy, 3rd ed, 1985, pg 609) [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002952)]",
   "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105568",
   "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002952#intermediate-acoustic-stria-1",
   "name": "intermediate acoustic stria",
   "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002952",
   "synonym": [
-    "commissure of Held",
-    "intermediate acoustic stria (Held)",
-    "Intermediate acoustic stria of Held",
-    "striae acusticae intermedius"
+    "commissure of held",
+    "intermediate acoustic stria (held)",
+    "intermediate acoustic stria of held"
   ]
 }
+
diff --git a/instances/latest/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld b/instances/latest/terminologies/UBERONParcellation/intermediateHypothalamicRegion.jsonld
@@ -4,19 +4,15 @@
   },
   "@id": "https://openminds.om-i.org/instances/UBERONParcellation/intermediateHypothalamicRegion",
   "@type": "https://openminds.om-i.org/types/UBERONParcellation",
-  "definition": "'Intermediate hypothalamic region' is a regional part of brain. It is part of the hypothalamus.",
-  "description": "The portion of the hypothalamus located generally internal to the region of the infundibulum.",
+  "definition": "Is a regional part of brain. Is part of the hypothalamus. [auto-generated from properties of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002555) ('is_a' and 'relationship')]",
+  "description": "The portion of the hypothalamus located generally internal to the region of the infundibulum. [definition of the [UBERON ontology term](http://purl.obolibrary.org/obo/UBERON_0002555)]",
   "interlexIdentifier": "http://uri.interlex.org/base/ilx_0105570",
   "knowledgeSpaceLink": "https://knowledge-space.org/wiki/UBERON:0002555#intermediate-hypothalamic-region-1",
   "name": "intermediate hypothalamic region",
   "preferredOntologyIdentifier": "http://purl.obolibrary.org/obo/UBERON_0002555",
   "synonym": [
     "area hypothalamica intermedia",
-    "IHR",
-    "intermediate hypothalamic area",
-    "intermediate hypothalamus",
-    "medial hypothalamus",
-    "middle hypothalamus",
-    "regio hypothalamica intermedia"
+    "intermediate hypothalamic area"
   ]
 }
+