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separate MRI pulse sequences from techniques #17

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12 changes: 7 additions & 5 deletions README.md
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<picture>
<source media="(prefers-color-scheme: dark)" srcset="/img/openMINDS_instances_logo_dark.png">
<source media="(prefers-color-scheme: light)" srcset="/img/openMINDS_instances_logo_light.png">
<img alt="openMINDS instances logo: created by U. Schlegel, L. Zehl, C. Hagen Blixhavn" src="/img/openMINDS_instances_logo_light.png" title="openMINDS instances" align="right" height="70">
<img alt="openMINDS instances" src="/img/openMINDS_instances_logo_light.png" title="Logo created by Schlegel, Zehl, and Hagen Blixhavn." align="right" height="70">
</picture>
</a>

# openMINDS_instances

![GitHub][license-url]
![GitHub contributors][contributors-url]
[![GitHub][license-shield]][license-url]
[![GitHub contributors][contributors-shield]][contributors-url]

To learn more about the openMINDS metadata framework please go to :arrow_right: [**ReadTheDocs**][docu-url].
For browsing through the metadata instances you can also directly jump to the :arrow_right: [**instance libraries**][libraries-url].
Expand All @@ -22,7 +22,9 @@ If you want to contribute please follow our :arrow_right: [**contribution guidel
<!-- MARKDOWN LINKS & IMAGES -->
<!-- https://www.markdownguide.org/basic-syntax/#reference-style-links -->
[contribution-url]: https://openminds-documentation.readthedocs.io/en/latest/shared/contribution_guidelines.html
[contributors-url]: https://img.shields.io/github/contributors/openMetadataInitiative/openMINDS_documentation
[contributors-url]: https://github.com/openMetadataInitiative/openMINDS_instances/graphs/contributors
[contributors-shield]: https://img.shields.io/github/contributors/openMetadataInitiative/openMINDS_instances
[docu-url]: https://openminds-documentation.readthedocs.io
[libraries-url]: https://openminds-documentation.readthedocs.io/en/latest/instance_libraries.html
[license-url]: https://img.shields.io/github/license/openMetadataInitiative/openMINDS_documentation
[license-url]: https://raw.githubusercontent.com/openMetadataInitiative/openMINDS_instances/main/LICENSE
[license-shield]: https://img.shields.io/github/license/openMetadataInitiative/openMINDS_instances
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"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
},
"@id": "https://openminds.ebrains.eu/instances/technique/T1PulseSequence",
"@type": "https://openminds.ebrains.eu/controlledTerms/Technique",
"@id": "https://openminds.ebrains.eu/instances/MRIPulseSequence/T1PulseSequence",
"@type": "https://openminds.ebrains.eu/controlledTerms/MRIPulseSequence",
"definition": "In magnetic resonance imaging, a 'T1 pulse sequence' is a contrasting technique that allows the magnetization of the specimen or object to recover (spin-lattice relaxation) before measuring the magnetic resonance signal by changing the repetition time. [adapted from [wikipedia](https://en.wikipedia.org/wiki/MRI_sequence)]",
"description": null,
"interlexIdentifier": null,
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"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
},
"@id": "https://openminds.ebrains.eu/instances/technique/T2PulseSequence",
"@type": "https://openminds.ebrains.eu/controlledTerms/Technique",
"@id": "https://openminds.ebrains.eu/instances/MRIPulseSequence/T2PulseSequence",
"@type": "https://openminds.ebrains.eu/controlledTerms/MRIPulseSequence",
"definition": "In magnetic resonance imaging, a 'T2 pulse sequence' is a contrasting technique that allows the magnetization of the specimen or object to decay (spin-spin relaxation) before measuring the magnetic resonance signal by changing the echo time. [adapted from [wikipedia](https://en.wikipedia.org/wiki/MRI_sequence)]",
"description": null,
"interlexIdentifier": null,
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"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
},
"@id": "https://openminds.ebrains.eu/instances/technique/echoPlanarPulseSequence",
"@type": "https://openminds.ebrains.eu/controlledTerms/Technique",
"@id": "https://openminds.ebrains.eu/instances/MRIPulseSequence/echoPlanarPulseSequence",
"@type": "https://openminds.ebrains.eu/controlledTerms/MRIPulseSequence",
"definition": "In magnetic resonance imaging, a 'echo-planar pulse sequence' is a contrasting technique where each radio frequency field (RF) excitation is followed by a train of gradient echoes with different spatial encoding allowing for very rapid scanning. [adapted from [wikipedia](https://en.wikipedia.org/wiki/Physics_of_magnetic_resonance_imaging#Echo-planar_imaging)]",
"description": null,
"interlexIdentifier": null,
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"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
},
"@id": "https://openminds.ebrains.eu/instances/technique/gradientEchoPulseSequence",
"@type": "https://openminds.ebrains.eu/controlledTerms/Technique",
"@id": "https://openminds.ebrains.eu/instances/MRIPulseSequence/gradientEchoPulseSequence",
"@type": "https://openminds.ebrains.eu/controlledTerms/MRIPulseSequence",
"definition": "In magnetic resonance imaging, a 'gradient-echo pulse sequence' is a contrast generation technique that rapidly induces bulk changes in the spin magnetization of a sample by applying a series of carefully constructed pulses so that the change in the gradient of the magnetic field is maximized, trading contrast for speed (cf. [Hargreaves (2012)](https://doi.org/10.1002/jmri.23742)).",
"description": null,
"interlexIdentifier": null,
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"@context": {
"@vocab": "https://openminds.ebrains.eu/vocab/"
},
"@id": "https://openminds.ebrains.eu/instances/technique/spinEchoPulseSequence",
"@type": "https://openminds.ebrains.eu/controlledTerms/Technique",
"@id": "https://openminds.ebrains.eu/instances/MRIPulseSequence/spinEchoPulseSequence",
"@type": "https://openminds.ebrains.eu/controlledTerms/MRIPulseSequence",
"definition": "In magnetic resonance imaging, a 'spin echo pulse sequence' is a contrast generation technique that induces bulk changes in the spin magnetization of a sample by applying sequential pulses of resonant electromagnetic waves at different angles (cf. [Fonseca (2013)](https://doi.org/10.5772/53693)).",
"description": null,
"interlexIdentifier": null,
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