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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 6

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 245 repositories
  • downSample Public
    oicr-gsi/downSample’s past year of commit activity
    WDL 0 0 0 0 Updated Apr 1, 2025
  • pipeline-timings Public

    code for creating plots for review of pipeline/workflow run timings

    oicr-gsi/pipeline-timings’s past year of commit activity
    Python 0 0 0 0 Updated Apr 1, 2025
  • cardea Public

    Case data API

    oicr-gsi/cardea’s past year of commit activity
    Java 0 Apache-2.0 0 0 1 Updated Apr 1, 2025
  • varscan Public

    varscan repo contains code for Varscan workflow

    oicr-gsi/varscan’s past year of commit activity
    WDL 0 GPL-3.0 0 0 0 Updated Apr 1, 2025
  • dimsum Public

    QC Tracking dashboard

    oicr-gsi/dimsum’s past year of commit activity
    Java 1 GPL-3.0 0 0 1 Updated Apr 1, 2025
  • vardict Public
    oicr-gsi/vardict’s past year of commit activity
    WDL 0 0 0 1 Updated Apr 1, 2025
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 9 GPL-3.0 6 6 4 Updated Mar 31, 2025
  • cBioPortal_Importer Public

    Scripts to facilitate loading data into cBioPortal

    oicr-gsi/cBioPortal_Importer’s past year of commit activity
    Python 0 0 0 0 Updated Mar 31, 2025
  • vidarr Public

    Analysis provenance tracking server

    oicr-gsi/vidarr’s past year of commit activity
    Java 1 MIT 1 0 2 Updated Mar 31, 2025
  • star Public

    Workflow for STAR RNAseq aligner

    oicr-gsi/star’s past year of commit activity
    WDL 0 GPL-3.0 1 0 2 Updated Mar 31, 2025
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