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fb50180
definition and refs
JABelfiore Nov 14, 2024
1ef88f1
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
JABelfiore Nov 15, 2024
e585241
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
JABelfiore Nov 18, 2024
783b84c
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
JABelfiore Nov 25, 2024
772789c
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
JABelfiore Nov 28, 2024
dff344a
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
JABelfiore Dec 13, 2024
5b80ca2
fixed dbxrefs
Caroline-99 Dec 17, 2024
d15acc9
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
Caroline-99 Dec 17, 2024
f0406c7
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
Caroline-99 Dec 19, 2024
d2cf210
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
JABelfiore Dec 23, 2024
7dcc2e4
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
JABelfiore Jan 23, 2025
395347c
Update uberon-edit.obo
JABelfiore Jan 23, 2025
18268ca
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
JABelfiore Jan 27, 2025
4e814fe
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
JABelfiore Feb 7, 2025
dba3ed9
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
Caroline-99 Mar 10, 2025
ee6e733
Merge branch 'master' into 3423-stratum-corneum-of-esophageal-epithelium
matentzn Jan 15, 2026
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31 changes: 20 additions & 11 deletions src/ontology/uberon-edit.obo
Original file line number Diff line number Diff line change
Expand Up @@ -36856,7 +36856,7 @@ intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002187 ! terminal bronchiole
relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
relationship: has_part CL:0000158 {source="FMA"} ! club cell
relationship: has_part CL:1000271 ! lung ciliated cell
relationship: has_part CL:1000271 ! lung multiciliated epithelial cell
property_value: taxon_notes "A pseudostratified epithelium, containing basal cells, stem cells of the airway, submucosal glands and cartilage rings, is limited to the trachea and large lobar airways in the mouse (Morrisey and Hogan, 2010). This more complex epithelium extends to terminal bronchioles in the human[DOI:10.1242/dev.115469]" xsd:string

[Term]
Expand Down Expand Up @@ -39644,8 +39644,8 @@ intersection_of: part_of UBERON:0002186 ! bronchiole
relationship: contributes_to_morphology_of UBERON:0002186 ! bronchiole
relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
relationship: has_part CL:0000158 ! club cell
relationship: has_part CL:0002145 {source="FMA"} ! ciliated columnar cell of tracheobronchial tree
relationship: has_part CL:1000271 ! lung ciliated cell
relationship: has_part CL:0002145 {source="FMA"} ! multiciliated columnar cell of tracheobronchial tree
relationship: has_part CL:1000271 ! lung multiciliated epithelial cell
relationship: part_of UBERON:0005039 ! mucosa of bronchiole

[Term]
Expand Down Expand Up @@ -47868,7 +47868,7 @@ intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002183 ! lobar bronchus
relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-Barbé
relationship: has_part CL:0002329 ! basal epithelial cell of tracheobronchial tree
relationship: has_part CL:0002332 ! ciliated cell of the bronchus
relationship: has_part CL:0002332 ! multiciliated epithelial cell of the bronchus
relationship: has_part CL:0017000 ! pulmonary ionocyte

[Term]
Expand Down Expand Up @@ -47925,10 +47925,10 @@ relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig-
relationship: has_part CL:0000158 ! club cell
relationship: has_part CL:0002208 ! brush cell of bronchus
relationship: has_part CL:0002329 ! basal epithelial cell of tracheobronchial tree
relationship: has_part CL:0002332 ! ciliated cell of the bronchus
relationship: has_part CL:0002332 ! multiciliated epithelial cell of the bronchus
relationship: has_part CL:0017000 ! pulmonary ionocyte
relationship: has_part CL:1000143 ! lung goblet cell
relationship: has_part CL:1000223 ! lung neuroendocrine cell
relationship: has_part CL:1000223 ! pulmonary neuroendocrine cell
relationship: part_of UBERON:0002184 ! segmental bronchus

[Term]
Expand Down Expand Up @@ -72969,8 +72969,8 @@ id: UBERON:0003532
name: hindlimb skin
def: "A zone of skin that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic]
synonym: "hind limb skin" EXACT [OBOL:automatic]
synonym: "lower limb skin" EXACT [FMA:23102]
synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473]
synonym: "lower limb skin" EXACT [FMA:23102]
synonym: "skin of hind limb" EXACT [OBOL:automatic]
synonym: "skin of hindlimb" EXACT [OBOL:automatic]
synonym: "skin of lower extremity" EXACT [OBOL:automatic]
Expand Down Expand Up @@ -116143,7 +116143,7 @@ xref: NCIT:C45715
xref: UMLS:C0682578 {source="ncithesaurus:Glandular_Epithelium"}
xref: UMLS:C1708242 {source="ncithesaurus:Glandular_Epithelial_Tissue"}
intersection_of: UBERON:0000483 ! epithelium
intersection_of: composed_primarily_of CL:0000150 ! glandular epithelial cell
intersection_of: composed_primarily_of CL:0000150 ! glandular secretory epithelial cell
disjoint_from: UBERON:0011952 ! non-glandular epithelium
property_value: editor_note "consider splitting epithelium from epithelial tissue" xsd:string

Expand Down Expand Up @@ -117486,14 +117486,14 @@ xref: FMA:64800
xref: NCIT:C13182
xref: UMLS:C0225337 {source="ncithesaurus:Columnar_Epithelium"}
intersection_of: UBERON:0000485 ! simple columnar epithelium
intersection_of: composed_primarily_of CL:0000150 ! glandular epithelial cell
intersection_of: composed_primarily_of CL:0000150 ! glandular secretory epithelial cell

[Term]
id: UBERON:0006930
name: glandular cuboidal epithelium
xref: FMA:66809
intersection_of: UBERON:0000484 ! simple cuboidal epithelium
intersection_of: composed_primarily_of CL:0000150 ! glandular epithelial cell
intersection_of: composed_primarily_of CL:0000150 ! glandular secretory epithelial cell

[Term]
id: UBERON:0006931
Expand Down Expand Up @@ -134921,7 +134921,7 @@ synonym: "pulmonary neuroepithelial body" EXACT [MP:0010921]
xref: EMAPA:37943 {source="MA:th"}
is_a: UBERON:0000061 {source="MP"} ! anatomical structure
relationship: contributes_to_morphology_of UBERON:0000115 ! lung epithelium
relationship: has_part CL:1000223 ! lung neuroendocrine cell
relationship: has_part CL:1000223 ! pulmonary neuroendocrine cell
relationship: part_of UBERON:0000115 ! lung epithelium
relationship: part_of UBERON:8600018 ! neuroendocrine system

Expand Down Expand Up @@ -224708,6 +224708,15 @@ relationship: dc-contributor https://orcid.org/0009-0005-7919-4905
relationship: part_of UBERON:0001043 ! esophagus
property_value: dcterms-date "2024-11-14T15:00:21Z" xsd:dateTime

[Term]
id: UBERON:8700003
name: stratum corneum of esophageal epithelium
def: "The outermost layer of the stratified squamous epithelium lining the esophagus, composed of several layers of flattened epithelial cells that are partially or non-keratinized. This layer provides a protective barrier against mechanical and chemical insults, contributing to tissue integrity and regulating permeability through its apical cell membranes and intercellular junctional complexes." [doi:10.1038/gimo15, doi:10.1152/ajpgi.00088.2015, https://en.wikipedia.org/wiki/Stratified_squamous_epithelium, PMID:21126700, PMID:26019440]
is_a: UBERON:0010304 ! non-keratinized stratified squamous epithelium
relationship: dc-contributor https://orcid.org/0009-0005-7919-4905
relationship: part_of UBERON:0001043 ! esophagus
property_value: dcterms-date "2024-11-14T15:10:48Z" xsd:dateTime

[Term]
id: UBERON:8850000
name: lumen of pulmonary alveolus
Expand Down