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Copilot AI commented Aug 19, 2025

This PR adds a new term for basilar papilla auditory hair cell (CL:7770001) to the Cell Ontology as requested in the New Term Request.

Changes Made

  • Term ID: CL:7770001 (using CL_777xxxx range for new term requests)
  • Label: "basilar papilla auditory hair cell"
  • Synonym: "basilar papilla hair cell" (consistent with cochlea auditory hair cell synonym pattern)
  • Parent: auditory hair cell (CL:0000202)
  • Anatomical location: basilar papilla (UBERON:0013731)

Definition

"An auditory hair cell found in the basilar papilla, the auditory sensory organ of lizards, amphibians, and birds, which is homologous to the Corti in mammals."

The definition is supported by PMID:33761346 and follows the established pattern used for similar cell types in the ontology.

Technical Details

The term follows the cellPartOfAnatomicalEntity design pattern, with the logical definition:

EquivalentClasses(CL:7770001 ObjectIntersectionOf(CL:0000202 ObjectSomeValuesFrom(BFO:0000050 UBERON:0013731)))

This mirrors the structure of cochlea auditory hair cell (CL:4023120) but uses basilar papilla (UBERON:0013731) instead of cochlea (UBERON:0002227) as the anatomical location.

Validation

  • ✅ Ontology syntax validation passes (robot convert)
  • ✅ Reasoning validation passes (robot reason with ELK)
  • ✅ Follows established naming and annotation patterns
  • ✅ Includes proper metadata (contributor ORCID, creation date, issue tracker)

Fixes #3190.


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@dragon-ai-agent

- Added new term CL:7770001 for basilar papilla auditory hair cell
- Follows cellPartOfAnatomicalEntity pattern like CL:4023120
- Parent: auditory hair cell (CL:0000202)
- Location: basilar papilla (UBERON:0013731)
- Includes proper definition, synonym, and metadata
- References PMID:33761346 and links to issue #3190

Co-authored-by: matentzn <[email protected]>
Copilot AI changed the title [WIP] [NTR] basilar papilla auditory hair cell Add basilar papilla auditory hair cell (CL:7770001) Aug 19, 2025
Copilot AI requested a review from matentzn August 19, 2025 16:01
@dosumis
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dosumis commented Dec 8, 2025

#gogoeditdiff

@dosumis dosumis marked this pull request as ready for review December 8, 2025 13:40
@dosumis dosumis added this to the Milestone 22/12/2025 milestone Dec 8, 2025
@dosumis dosumis moved this from In Progress to To Do in CL_wtgc_ticket_tracker Dec 8, 2025
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github-actions bot commented Dec 8, 2025

Your branch is 154 commit/s behind, please update your branch.

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github-actions bot commented Jan 8, 2026

This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR editor will be allowed to proceed with merging without explicit approval, should they wish to do so.

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[NTR] basilar papilla auditory hair cell

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