Skip to content

juxtaglomerular complex cell merged with kidney granular cell #3109

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
JABelfiore wants to merge 21 commits into
base: master
Choose a base branch
from
Open

juxtaglomerular complex cell merged with kidney granular cell #3109

Show file tree
Hide file tree
Changes from 18 commits
Commits
Show all changes
21 commits
Select commit Hold shift + click to select a range
557e9ad
juxtaglomerular complex cell merged with kidney granular cell
JABelfiore May 2, 2025
50cb90e
Update kidney_upper_slim.owl
JABelfiore May 2, 2025
e9a3431
" issue amend
JABelfiore May 2, 2025
d2d8261
Update cl-edit.owl
JABelfiore May 2, 2025
c7de84a
deprecated true
JABelfiore May 2, 2025
0d5cdd0
Update kidney_upper_slim.owl
JABelfiore May 8, 2025
f0cb94c
Merge branch 'master' into 2471-juxtaglomerular-complex-cells-merge
JABelfiore May 8, 2025
d9172ce
Update kidney_upper_slim.tsv
JABelfiore May 8, 2025
51e8251
Revert "Update kidney_upper_slim.owl"
JABelfiore May 8, 2025
4e07d99
Merge branch 'master' into 2471-juxtaglomerular-complex-cells-merge
JABelfiore May 8, 2025
c340c06
Merge branch 'master' into 2471-juxtaglomerular-complex-cells-merge
JABelfiore May 12, 2025
8fd6c3a
Revert "Update kidney_upper_slim.tsv"
JABelfiore May 12, 2025
5e47f45
Update kidney_upper_slim.csv
JABelfiore May 12, 2025
bb0c612
update slims
JABelfiore May 12, 2025
dcb2009
Merge branch 'master' into 2471-juxtaglomerular-complex-cells-merge
JABelfiore May 15, 2025
0a182dc
Merge branch 'master' into 2471-juxtaglomerular-complex-cells-merge
aleixpuigb May 21, 2025
099f5bb
Merge branch 'master' into 2471-juxtaglomerular-complex-cells-merge
JABelfiore May 22, 2025
90bef01
glomerulus update and abbreviation fix
JABelfiore May 22, 2025
e17b36e
updated to related synonym
JABelfiore Jun 16, 2025
3bd0091
Merge branch 'master' into 2471-juxtaglomerular-complex-cells-merge
JABelfiore Jun 16, 2025
45a075b
Revert "Merge branch 'master' into 2471-juxtaglomerular-complex-cells…
JABelfiore Jun 16, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
28 changes: 16 additions & 12 deletions src/ontology/cl-edit.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9284,15 +9284,19 @@ SubClassOf(obo:CL_0000647 ObjectSomeValuesFrom(obo:RO_0002353 obo:GO_0000768))

# Class: obo:CL_0000648 (kidney granular cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:cvs") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:11457727") obo:IAO_0000115 obo:CL_0000648 "A smooth muscle cell that synthesizes, stores, and secretes the enzyme renin. This cell type are located in the wall of the afferent arteriole at the entrance to the glomerulus. While having a different origin than other kidney smooth muscle cells, this cell type expresses smooth muscle actin upon maturation.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:cvs") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:11457727") obo:IAO_0000115 obo:CL_0000648 "A smooth muscle cell that synthesizes, stores, and secretes the enzyme renin. This cell type are located in the wall of the afferent arteriole at the entrance to the glomerulus (a structure within the renal cortex). While having a different origin than other kidney smooth muscle cells, this cell type expresses smooth muscle actin upon maturation.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/s00424-012-1126-7") obo:OMO_0003000 obo:CL_0000648 "JG cell")
Copy link
Collaborator

@aleixpuigb aleixpuigb May 22, 2025 •
edited
Loading

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Please, add this term (JG cell) as related synonym, and add the AP has_synonym_type 'abbreviation' (entity IRI).

AnnotationAssertion(terms:contributor obo:CL_0000648 <https://orcid.org/0009-0005-7919-4905>)
AnnotationAssertion(terms:date obo:CL_0000648 "2025-05-02T12:33:27Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000648 "juxtaglomerular cell")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000648 "FMA:84138")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000648 "JG cell")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000648 "KUPO:0001028")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000648 "juxtaglomerular complex cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0072052") oboInOwl:hasExactSynonym obo:CL_0000648 "juxtaglomerulus cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000648 "renin secreting cell")
Copy link
Collaborator

@aleixpuigb aleixpuigb May 21, 2025

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

The annotation property for abbreviation is not used correctly.

AnnotationAssertion(rdfs:label obo:CL_0000648 "kidney granular cell")
EquivalentClasses(obo:CL_0000648 ObjectIntersectionOf(obo:CL_0000151 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002113) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002001)))
EquivalentClasses(obo:CL_0000648 ObjectIntersectionOf(obo:CL_0002681 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002303) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0002001)))
Copy link
Collaborator

@aleixpuigb aleixpuigb May 21, 2025

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I agree with the change since it is a cortical cell, and 'secreting cell' is reasoned. In the textual definition, people who know kidney anatomy will know that the glomerulus is part of the cortex. However, there might be people that don't know and might want to have it included in the textual definition (maybe in bracket after glomerulus). What do you think?

SubClassOf(obo:CL_0000648 obo:CL_0000192)
SubClassOf(obo:CL_0000648 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002303))

# Class: obo:CL_0000649 (prickle cell)

Expand Down Expand Up @@ -15710,9 +15714,9 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002173 "polar cushion cells
AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0002173 "lacis cell")
AnnotationAssertion(rdfs:label obo:CL_0002173 "extraglomerular mesangial cell")
EquivalentClasses(obo:CL_0002173 ObjectIntersectionOf(obo:CL_0002320 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002321)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002173 obo:CL_0000648)
SubClassOf(obo:CL_0002173 obo:CL_0000650)
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002173 obo:CL_0002320)
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002173 obo:CL_1000618)

# Class: obo:CL_0002174 (follicular cell of ovary)

Expand Down Expand Up @@ -27220,14 +27224,14 @@ EquivalentClasses(obo:CL_1000617 ObjectIntersectionOf(obo:CL_1000504 ObjectSomeV
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000617 obo:CL_1000504)
SubClassOf(obo:CL_1000617 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001294))

# Class: obo:CL_1000618 (juxtaglomerular complex cell)
# Class: obo:CL_1000618 (obsolete juxtaglomerular complex cell)

AnnotationAssertion(obo:IAO_0000233 obo:CL_1000618 "https://github.com/obophenotype/cell-ontology/issues/2471")
AnnotationAssertion(obo:IAO_0100001 obo:CL_1000618 obo:CL_0000648)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000618 "KUPO:0001028")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GO:0072052") oboInOwl:hasExactSynonym obo:CL_1000618 "juxtaglomerulus cell")
AnnotationAssertion(rdfs:label obo:CL_1000618 "juxtaglomerular complex cell")
EquivalentClasses(obo:CL_1000618 ObjectIntersectionOf(obo:CL_0002681 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002303)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000618 obo:CL_0002681)
SubClassOf(obo:CL_1000618 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002303))
AnnotationAssertion(rdfs:comment obo:CL_1000618 "merged with kidney granular cell")
AnnotationAssertion(rdfs:label obo:CL_1000618 "obsolete juxtaglomerular complex cell")
AnnotationAssertion(owl:deprecated obo:CL_1000618 "true"^^xsd:boolean)

# Class: obo:CL_1000681 (kidney cortex interstitial cell)

Expand Down Expand Up @@ -27497,8 +27501,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000850 "KUPO:0001057")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33491562") oboInOwl:hasExactSynonym obo:CL_1000850 "macula densa cell")
AnnotationAssertion(rdfs:label obo:CL_1000850 "macula densa epithelial cell")
EquivalentClasses(obo:CL_1000850 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002335)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000850 obo:CL_0000648)
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000850 obo:CL_0002584)
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000850 obo:CL_1000618)
SubClassOf(obo:CL_1000850 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0097730))
SubClassOf(obo:CL_1000850 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0003093))
SubClassOf(obo:CL_1000850 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_1900133))
Expand Down
4 changes: 2 additions & 2 deletions src/ontology/components/cellxgene_subset.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/cl/components/cellxgene_subset.owl>
<http://purl.obolibrary.org/obo/cl/releases/2025-04-10/components/cellxgene_subset.owl>
Annotation(owl:versionInfo "2025-04-10")
<http://purl.obolibrary.org/obo/cl/releases/2025-05-12/components/cellxgene_subset.owl>
Annotation(owl:versionInfo "2025-05-12")

Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000000>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000001>))
Expand Down
9 changes: 2 additions & 7 deletions src/ontology/components/kidney_upper_slim.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/cl/components/kidney_upper_slim.owl>
<http://purl.obolibrary.org/obo/cl/releases/2025-04-10/components/kidney_upper_slim.owl>
Annotation(owl:versionInfo "2025-04-10")
<http://purl.obolibrary.org/obo/cl/releases/2025-05-12/components/kidney_upper_slim.owl>
Annotation(owl:versionInfo "2025-05-12")

Declaration(Class(<http://purl.obolibrary.org/obo/CL_0002188>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0002305>))
Expand All @@ -21,7 +21,6 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CL_1000507>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_1000546>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_1000550>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_1000612>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_1000618>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_1000768>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_1000849>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_1000891>))
Expand Down Expand Up @@ -80,10 +79,6 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt

AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_1000612> <http://purl.obolibrary.org/obo/cl#kidney_upper_slim>)

# Class: <http://purl.obolibrary.org/obo/CL_1000618> (<http://purl.obolibrary.org/obo/CL_1000618>)

AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_1000618> <http://purl.obolibrary.org/obo/cl#kidney_upper_slim>)

# Class: <http://purl.obolibrary.org/obo/CL_1000768> (<http://purl.obolibrary.org/obo/CL_1000768>)

AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_1000768> <http://purl.obolibrary.org/obo/cl#kidney_upper_slim>)
Expand Down
20 changes: 10 additions & 10 deletions src/ontology/imports/merged_import.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14780,7 +14780,7 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000233> "ter
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/IAO_0000424> "A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones"@en)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000424> "expand expression to"@en)

# Annotation Property: <http://purl.obolibrary.org/obo/IAO_0000700> (has ontology root term)
# Annotation Property: <http://purl.obolibrary.org/obo/IAO_0000700> (preferred_root)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/IAO_0000700> "Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root."@en)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000700> "has ontology root term"@en)
Expand Down Expand Up @@ -15214,23 +15214,23 @@ AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#has
AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> "has_broad_synonym")
AnnotationAssertion(rdfs:seeAlso <http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> "https://github.com/information-artifact-ontology/ontology-metadata/issues/18")

# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasDbXref> (has cross-reference)
# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasDbXref> (database_cross_reference)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://www.geneontology.org/formats/oboInOwl#hasDbXref> "An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://github.com/information-artifact-ontology/ontology-metadata/issues/123>)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0002-7356-1779>)
AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasDbXref> "database_cross_reference")
AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasDbXref> "has cross-reference")

# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> (has exact synonym)
# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> (has_exact_synonym)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> "An alternative label for a class or property which has the exact same meaning than the preferred name/primary label.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> "https://github.com/information-artifact-ontology/ontology-metadata/issues/20")
AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> "has exact synonym"@en)
AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> "has_exact_synonym")
AnnotationAssertion(rdfs:seeAlso <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> "https://github.com/information-artifact-ontology/ontology-metadata/issues/20")

# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym> (has narrow synonym)
# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym> (has_narrow_synonym)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym> "An alternative label for a class or property which has a more specific meaning than the preferred name/primary label.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym> "https://github.com/information-artifact-ontology/ontology-metadata/issues/19")
Expand Down Expand Up @@ -15277,8 +15277,8 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/BFO_0000050> "part of"@en)
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/BFO_0000050> <http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections>)
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/BFO_0000050> <http://ontologydesignpatterns.org/wiki/Submissions:PartOf>)
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/BFO_0000050> "https://wiki.geneontology.org/Part_of"^^xsd:anyURI)
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/BFO_0000050> "http://www.obofoundry.org/ro/#OBO_REL:part_of")
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/BFO_0000050> "https://wiki.geneontology.org/Part_of"^^xsd:anyURI)
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/RO_0002131>)
InverseObjectProperties(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/BFO_0000051>)
TransitiveObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000050>)
Expand Down Expand Up @@ -17207,7 +17207,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_24431> <http://purl.obolibrary.

EquivalentClasses(<http://purl.obolibrary.org/obo/CHEBI_36080> <http://purl.obolibrary.org/obo/PR_000000001>)

# Class: <http://purl.obolibrary.org/obo/CL_0000000> (<http://purl.obolibrary.org/obo/CL_0000000>)
# Class: <http://purl.obolibrary.org/obo/CL_0000000> (cell)

DisjointClasses(<http://purl.obolibrary.org/obo/CL_0000000> <http://purl.obolibrary.org/obo/GO_0031012>)
DisjointClasses(<http://purl.obolibrary.org/obo/CL_0000000> <http://purl.obolibrary.org/obo/GO_0032991>)
Expand Down Expand Up @@ -94812,11 +94812,11 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date>
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/GO_0072052> "biological_process")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/GO_0072052> "GO:0072052")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0072052> "juxtaglomerulus cell differentiation")
EquivalentClasses(<http://purl.obolibrary.org/obo/GO_0072052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030154> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002315> <http://purl.obolibrary.org/obo/CL_1000618>)))
EquivalentClasses(<http://purl.obolibrary.org/obo/GO_0072052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0030154> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002315> <http://purl.obolibrary.org/obo/CL_0000648>)))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0072052> <http://purl.obolibrary.org/obo/GO_0061005>)
SubClassOf(<http://purl.obolibrary.org/obo/GO_0072052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0072051>))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0072052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002162> <http://purl.obolibrary.org/obo/NCBITaxon_7776>))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0072052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002315> <http://purl.obolibrary.org/obo/CL_1000618>))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0072052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002315> <http://purl.obolibrary.org/obo/CL_0000648>))

# Class: <http://purl.obolibrary.org/obo/GO_0072053> (renal inner medulla development)

Expand Down Expand Up @@ -95542,11 +95542,11 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date>
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/GO_0072142> "biological_process")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/GO_0072142> "GO:0072142")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0072142> "juxtaglomerulus cell development")
EquivalentClasses(<http://purl.obolibrary.org/obo/GO_0072142> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0048468> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002296> <http://purl.obolibrary.org/obo/CL_1000618>)))
EquivalentClasses(<http://purl.obolibrary.org/obo/GO_0072142> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0048468> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002296> <http://purl.obolibrary.org/obo/CL_0000648>)))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0072142> <http://purl.obolibrary.org/obo/GO_0048468>)
SubClassOf(<http://purl.obolibrary.org/obo/GO_0072142> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0072052>))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0072142> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002162> <http://purl.obolibrary.org/obo/NCBITaxon_7776>))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0072142> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002296> <http://purl.obolibrary.org/obo/CL_1000618>))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0072142> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002296> <http://purl.obolibrary.org/obo/CL_0000648>))

# Class: <http://purl.obolibrary.org/obo/GO_0072143> (mesangial cell development)

Expand Down
4 changes: 2 additions & 2 deletions src/patterns/definitions.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/cl/patterns/definitions.owl>
<http://purl.obolibrary.org/obo/cl/releases/2025-05-02/patterns/definitions.owl>
Annotation(owl:versionInfo "2025-05-02")
<http://purl.obolibrary.org/obo/cl/releases/2025-05-12/patterns/definitions.owl>
Annotation(owl:versionInfo "2025-05-12")

Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000031>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000084>))
Expand Down
1 change: 0 additions & 1 deletion src/templates/kidney_upper_slim.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,6 @@ CL:0002305,http://purl.obolibrary.org/obo/cl#kidney_upper_slim,epithelial cell o
CL:1000450,http://purl.obolibrary.org/obo/cl#kidney_upper_slim,epithelial cell of glomerular capsule
CL:0002306,http://purl.obolibrary.org/obo/cl#kidney_upper_slim,epithelial cell of proximal tubule
CL:0002188,http://purl.obolibrary.org/obo/cl#kidney_upper_slim,glomerular endothelial cell
CL:1000618,http://purl.obolibrary.org/obo/cl#kidney_upper_slim,juxtaglomerular complex cell
CL:1000891,http://purl.obolibrary.org/obo/cl#kidney_upper_slim,kidney arterial blood vessel cell
CL:1000454,http://purl.obolibrary.org/obo/cl#kidney_upper_slim,kidney collecting duct epithelial cell
CL:1000768,http://purl.obolibrary.org/obo/cl#kidney_upper_slim,kidney connecting tubule epithelial cell
Expand Down