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42 Open 40 Closed
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Issues list

'AttributeError' on running predict.py
#108 opened Mar 27, 2025 by sHr3y4s1
Is there a way to install this without using the mentioned Conda Channel.
#107 opened Mar 23, 2025 by Jetzu
Bug in mpnn_fr score computation
#106 opened Mar 4, 2025 by sirius777coder
Cause: haiku.experimental.flax features require flax to be installed.
#105 opened Mar 3, 2025 by cucumber-potato
ModuleNotFoundError: No module named '_helpers_silent'
#104 opened Feb 26, 2025 by cucumber-potato
relax_cycles number
#103 opened Feb 21, 2025 by fanch1122
Incompatible options in dl_interface_design.py
#101 opened Feb 7, 2025 by rszabla
Rosetta delta delta G (ddG) calculation
#100 opened Jan 31, 2025 by RodenLuo
1
Some typo in the template residue mask code
#99 opened Nov 12, 2024 by sirius777coder
Multimer and Alphafold3 prediction
#98 opened Oct 31, 2024 by Kangfengyuuuu
8
Potential bug in the assignment of fixed positions to chains
#96 opened Oct 6, 2024 by ahof1704
Why can't get a complex after af2 relax prediction
#95 opened Sep 18, 2024 by uioQPS
Parallelization?
#93 opened Aug 21, 2024 by Epannec
2
SCOPData Deprecated in Latest Biopython
#92 opened Aug 13, 2024 by mnoyes68
weird random error No such file or directory: 'temp.pdb' and -temperature: command not found
#89 opened Aug 1, 2024 by 18217265596
FileNotFoundError in dl_binder_design when running multiple silent files in parallel
#88 opened Jul 27, 2024 by xuqiqin
Issue with predict.py utput
#87 opened Jul 27, 2024 by Bilal0101-debug
1
in af2_initial_guess/predict.py PDB mode skips checkpoints due to inconsistent naming in self.finished_structs
#86 opened Jul 25, 2024 by xuqiqin
2
dl_binder_design af2_initial_guess not functioning
#85 opened Jul 24, 2024 by A2t3m15
1
dl_interface_design.py does not like scaffolds with periods
#84 opened May 14, 2024 by drewschaub
An error occurred during the testing of the ProteinMPNN FastRelax Environment.
#83 opened May 9, 2024 by AIM132
4
In lab experiment, binding affinity is pretty strong, but pae_interaction is only around 28
#82 opened Apr 26, 2024 by Huilin-Li
3
Some confusion about the results
#81 opened Apr 24, 2024 by ghost
Unable to connect to GPU
#80 opened Apr 23, 2024 by david1234janitor
1
Any chance to share a docker or apptainer file?
#78 opened Apr 15, 2024 by yilunqi
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