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Update functional_annotation_2016.rst #165

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Aug 15, 2016
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Update functional_annotation_2016.rst #165

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14 changes: 8 additions & 6 deletions functional_annotation_2016.rst
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Expand Up @@ -98,19 +98,21 @@ Get example data and unzip::
grep -c '^>' cdna_nointrons_utrs.fa

Dammit takes quite a while on the whole set, so lets extract a smaller set to practice with::

head -3322 cdna_nointrons_utrs.fa > practice.fa
grep -c '^>' practice.fa

Run annotation::

dammit annotate practice.fa --database-dir /mnt/dbs/dammit_dbs/ --busco-group eukaryota --n_threads 15

You will get results from 6 different analyses:
#. Pfam-A
#. Rfam
#. OrthoDB
#. BUSCO
#. Uniref90
#. Transdecoder
* Pfam-A
* Rfam
* OrthoDB
* BUSCO
* Uniref90
* Transdecoder

InterProScan
============
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