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nf-core subworkflows lint isn't comparing output channels between the main.nf and meta.yml

bugSomething isn't workingSomething isn't working

Status: Open.

#4066 In nf-core/tools;

· SPPearce opened on Feb 27, 2026

Subworkflow meta.yml linting error when nested sbwf

bugSomething isn't workingSomething isn't working

Status: Open.

#4065 In nf-core/tools;

· LouisLeNezet opened on Feb 27, 2026

Linting: multi line tuple is interpreted as multiple inputs

bugSomething isn't workingSomething isn't working

Status: Open.

#4062 In nf-core/tools;

· matthdsm opened on Feb 27, 2026

Workflow handlers deprecated

enhancement

Status: Open.

#4060 In nf-core/tools;

· jpfeuffer opened on Feb 26, 2026

Renovate uv stuff

Status: Open.

#4057 In nf-core/tools;

· edmundmiller opened on Feb 24, 2026

--empty-template flag not producing fully empty module template

bugSomething isn't workingSomething isn't working

Status: Open.

#4054 In nf-core/tools;

· vagkaratzas opened on Feb 20, 2026

<code>nf-core subworkflows lint &lt;name&gt; --local</code> does not work for subworkflows in <code>subworkflows/local</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#4049 In nf-core/tools;

· nschan opened on Feb 18, 2026

Container Linting for Modules

Status: Open.

#4041 In nf-core/tools;

· JulianFlesch opened on Feb 12, 2026

nf-core update all depencencies (modules + subworkflows)

enhancement

Status: Open.

#4031 In nf-core/tools;

· maxulysse opened on Feb 6, 2026

<code>nf-core pipeline downloads</code> issues when downloading pipelines for <code>--platform</code>

bugSomething isn't workingSomething isn't working

downloadnf-core downloadnf-core download

Status: Open.

#4028 In nf-core/tools;

· MatthiasZepper opened on Feb 4, 2026

Idea: Roll out 'PR labeler' GitHub action to all pipeline (and modules) via template

enhancement

Status: Open.

#4025 In nf-core/tools;

· jfy133 opened on Feb 2, 2026

Re-test and label/exclude modules with failing tests

Status: Open.

#4016 In nf-core/tools;

· pinin4fjords opened on Jan 30, 2026