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Pin anndataR to v0.1.0 #197

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2 changes: 1 addition & 1 deletion modules/local/celda/Dockerfile
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FROM community.wave.seqera.io/library/bioconductor-celda_bioconductor-singlecellexperiment_r-hdf5r_r-pak:eae54a7b6809057d

RUN R -e "pak::pak('scverse/anndataR')"
RUN R -e "pak::pak('scverse/anndataR@0.1.0')"
2 changes: 1 addition & 1 deletion modules/local/doublet_detection/scds/Dockerfile
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FROM community.wave.seqera.io/library/bioconductor-scds_r-hdf5r_r-pak_r-xgboost:b848e7e3a7f5666d

RUN R -e "pak::pak('scverse/anndataR')"
RUN R -e "pak::pak('scverse/anndataR@0.1.0')"
2 changes: 1 addition & 1 deletion modules/local/seurat/Dockerfile
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FROM community.wave.seqera.io/library/bioconductor-glmgampoi_bioconductor-singlecellexperiment_r-hdf5r_r-pak_r-seurat:237343f98a0c9c66

RUN R -e "pak::pak('scverse/anndataR')"
RUN R -e "pak::pak('scverse/anndataR@0.1.0')"
2 changes: 1 addition & 1 deletion modules/local/soupx/Dockerfile
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FROM community.wave.seqera.io/library/r-hdf5r_r-pak_r-seurat_r-soupx:2624b52e87cb1f73

RUN R -e "pak::pak('scverse/anndataR')"
RUN R -e "pak::pak('scverse/anndataR@0.1.0')"
4 changes: 2 additions & 2 deletions tests/default.nf.test.snap
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Expand Up @@ -36,7 +36,7 @@
},
"CELDA_DECONTX": {
"r": "4.4.3",
"anndataR": "0.99.0",
"anndataR": "0.1.0",
"celda": "1.22.0"
},
"CELLTYPES_CELLTYPIST": {
Expand Down Expand Up @@ -297,4 +297,4 @@
},
"timestamp": "2025-06-07T14:25:32.300412343"
}
}
}
6 changes: 3 additions & 3 deletions tests/main_pipeline_build.nf.test.snap
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Expand Up @@ -36,7 +36,7 @@
},
"CELDA_DECONTX": {
"r": "4.4.3",
"anndataR": "0.99.0",
"anndataR": "0.1.0",
"celda": "1.22.0"
},
"CELLTYPES_CELLTYPIST": {
Expand Down Expand Up @@ -149,7 +149,7 @@
"SEURAT_INTEGRATION": {
"R": "4.4.3",
"Seurat": "5.3.0",
"anndataR": "0.99.0"
"anndataR": "0.1.0"
},
"UMAP": {
"pandas": "2.2.3",
Expand Down Expand Up @@ -323,4 +323,4 @@
},
"timestamp": "2025-06-07T15:32:33.744749359"
}
}
}
4 changes: 2 additions & 2 deletions tests/main_pipeline_extend.nf.test.snap
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Expand Up @@ -33,7 +33,7 @@
},
"CELDA_DECONTX": {
"r": "4.4.3",
"anndataR": "0.99.0",
"anndataR": "0.1.0",
"celda": "1.22.0"
},
"CELLTYPES_CELLTYPIST": {
Expand Down Expand Up @@ -211,4 +211,4 @@
},
"timestamp": "2025-06-07T15:14:19.272534201"
}
}
}
4 changes: 2 additions & 2 deletions tests/main_pipeline_qc.nf.test.snap
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Expand Up @@ -12,7 +12,7 @@
},
"CELDA_DECONTX": {
"r": "4.4.3",
"anndataR": "0.99.0",
"anndataR": "0.1.0",
"celda": "1.22.0"
},
"CELLTYPES_CELLTYPIST": {
Expand Down Expand Up @@ -118,4 +118,4 @@
},
"timestamp": "2025-06-07T20:00:51.395546637"
}
}
}
4 changes: 2 additions & 2 deletions tests/main_pipeline_reference_mapping.nf.test.snap
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Expand Up @@ -29,7 +29,7 @@
},
"CELDA_DECONTX": {
"r": "4.4.3",
"anndataR": "0.99.0",
"anndataR": "0.1.0",
"celda": "1.22.0"
},
"CELLTYPES_CELLTYPIST": {
Expand Down Expand Up @@ -211,4 +211,4 @@
},
"timestamp": "2025-06-07T20:00:48.182866511"
}
}
}
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