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Feature Request: Expression Quantification Support (Isoform, Gene, TPM, DE)

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#53 In nf-core/isoseq;

· AR-Shicheng opened on Jul 10, 2025

Need for Primer data from the "entrypoint" section of the pipeline

bugSomething isn't workingSomething isn't working

Status: Open.

#50 In nf-core/isoseq;

· raghvendra44 opened on May 6, 2025

JSON schema: Isoseq

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#48 In nf-core/isoseq;

· jen-reeve opened on Mar 25, 2025

Conversion to Gff and annotation with Eggnog-mapper

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#45 In nf-core/isoseq;

· GallVp opened on Jan 16, 2025

Masked or unmasked genome

questionFurther information is requestedFurther information is requested

Status: Open.

#43 In nf-core/isoseq;

· mlcossette9224 opened on Jan 15, 2025

GSTAMA_COLLAPSE error - ref_allele = fasta_dict[scaffold][var_pos] IndexError: list index out of range

bugSomething isn't workingSomething isn't working

Status: Open.

#37 In nf-core/isoseq;

· jlandry69 opened on Nov 29, 2024

fastq2bam convert

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#22 In nf-core/isoseq;

· Kratos12138 opened on Dec 22, 2023

Transcript annotation with gene names

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#18 In nf-core/isoseq;

· astulaaa opened on Jul 18, 2023

Conversion from subreads.fastq.gz to subreads.bam

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#16 In nf-core/isoseq;

· LEESojung1998 opened on Jun 30, 2023