Skip to content

Feat/bump modules - #22

Merged
matthdsm merged 17 commits into
devfrom
feat/bump-modules
Mar 26, 2026
Merged

Feat/bump modules#22
matthdsm merged 17 commits into
devfrom
feat/bump-modules

Conversation

@matthdsm

Copy link
Copy Markdown
Member

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@matthdsm
matthdsm requested a review from nvnieuwk March 26, 2026 13:30
@matthdsm

Copy link
Copy Markdown
Member Author

ngs-bits seems to output empty files.
@nvnieuwk any idea?

@nvnieuwk

Copy link
Copy Markdown
Member

Yes because the pipeline is run in stub mode, normally ngsbits shouldn't run if you enter a sex in the samplesheet for everything.

@nvnieuwk nvnieuwk left a comment

Copy link
Copy Markdown
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM

@matthdsm
matthdsm merged commit 74cc1b4 into dev Mar 26, 2026
7 checks passed
@matthdsm
matthdsm deleted the feat/bump-modules branch March 26, 2026 13:58
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants