buscolite 26.1.26

buscolite 26.1.26

Changes

• fix filtering, update plotting, bump version
• bump version
• Fix Python 3.8 compatibility issue with ET.indent()
• Fix linting and formatting issues
• Convert documentation to MkDocs with Material theme and GitHub Pages deployment
• Add BUSCO v6-compatible filtering and comprehensive tests
• Refactor plotting to separate CLI with enhanced JSON output
• Update pyhmmer dependency to >=0.12.0
• Format long lines in utilities.py for PEP 8 compliance

buscolite 25.4.24

buscolite 25.4.24

Changes

• checkout ref for python-publish
• update pypi publishing
• make testpypi upload manual
• fix integration logger test
• add integration tests; fix busco odb12 proteome compat; bump version

buscolite v25.4.23

• updates to code to support ODB12 BUSCO models. Differences include removal of the lengths_cutoffs file as well as some inconsistency in naming the headers in ancestral sequences and those that actually have hmms/ and prfls/

Full Changelog: v25.4.3...v25.4.23

buscolite v25.4.3

Full Changelog: v24.11.3...v25.4.3

• added code listing and formatting via pre-commit.

buscolite v24.11.3

Full Changelog: v24.7.29...v24.11.3

buscolite v24.7.29

Full Changelog: v23.10.26...v24.7.29

buscolite v23.10.26

• reduce extra threads in threadpoolexecutor
• move to CalVer versioning (date)

buscolite v0.5.1

• bug fixes and minor adjustments to the stats output

buscolite v0.4.8

Initial release of buscolite

• uses miniprot to do ancestral protein to genome alignments
• uses pyhmmer to do all HMM searches
• compatible with augustus v3.5.0