Replace staged input file with original URL

[bentsherman]

This PR uses nextflow-io/nextflow#5911 to trace staged input files to their original URL.

Test:

# initial run
rm -rf ~/.nextflow/plugins/nf-prov-1.4.0
nextflow run nf-prov-test/

# build nf-prov
(cd ../nextflow ; ./gradlew :nextflow:publishToMavenLocal)
make install

# resumed run (should fully resume)
../nextflow/build/releases/nextflow-25.03.1-edge-dist run nf-prov-test/ -plugins nf-prov@1.4.0 -resume

Before:

{
    "name": "de11525869ad90b98a2d376c4c30a545",
    "description": "WC_SAMPLE (1)",
    "input_list": [
        {
            "uri": "work/stage-5170692d-7ce4-44da-877a-8ed0fc6a9f29/b9/75a58cde91580a079c4fca5d42d70e/read2.fq.gz"
        },
        {
            "uri": "work/stage-5170692d-7ce4-44da-877a-8ed0fc6a9f29/4d/58a16d7add20fdcddcff6bdeea01d5/read1.fq.gz"
        }
    ],
}

After:

{
    "name": "de11525869ad90b98a2d376c4c30a545",
    "description": "WC_SAMPLE (1)",
    "input_list": [
        {
            "uri": "https://openstack.cebitec.uni-bielefeld.de:8080/swift/v1/denbi-mg-course/read2.fq.gz"
        },
        {
            "uri": "https://openstack.cebitec.uni-bielefeld.de:8080/swift/v1/denbi-mg-course/read1.fq.gz"
        }
    ],
}

[simleo]

Does this mean that the plugin will require a minimum Nextflow version to work, and what would that be?

[bentsherman]

If this gets merged, I would release a new plugin version that requires Nextflow 25.04 or newer. So if you use an older version of Nextflow, it will automatically use the current version of nf-prov