graphpype

Neuropycon project for graph analysis, can be used from ephypype and nipype

Documentation

https://neuropycon.github.io/graphpype/

Installation

pip install https://api.github.com/repos/neuropycon/graphpype/zipball/master

Or with pip:

pip install graphpype

Radatools

You should add all the directories from radatools to the PATH env variable:

1. Download radatools sotware:

http://deim.urv.cat/~sergio.gomez/radatools.php#download

2. Download and extract the zip file
3. Add following lines in your .bashrc:

For radatools 3.2

RADA_PATH=/home/david/Tools/Software/radatools-3.2-linux32

(replace /home/david/Tools/Software by your path to radatools)

export PATH=$PATH:$RADA_PATH/01-Prepare_Network/

export PATH=$PATH:$RADA_PATH/02-Find_Communities/

export PATH=$PATH:$RADA_PATH/03-Reformat_Results

export PATH=$PATH:$RADA_PATH/04-Other_Tools/

For radatools 4.0

RADA_PATH=/home/david/Tools/Software/radatools-4.0-linux64

(replace /home/david/Tools/Software by your path to radatools)

export PATH=$PATH:$RADA_PATH/Network_Tools

export PATH=$PATH:$RADA_PATH/Network_Properties

export PATH=$PATH:$RADA_PATH/Communities_Detection

export PATH=$PATH:$RADA_PATH/Communities_Tools

For radatools 5.0

RADA_PATH=/home/david/Tools/Software/radatools-5.0-linux64

(replace /home/david/Tools/Software by your path to radatools)

export PATH=$PATH:$RADA_PATH/Network_Tools

export PATH=$PATH:$RADA_PATH/Network_Properties

export PATH=$PATH:$RADA_PATH/Communities_Detection

export PATH=$PATH:$RADA_PATH/Communities_Tools