added note Pre/Post Glioma segmentation with links + formated links #66
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evamariie
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May 29, 2025
evamariie
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- added Note with links (from BrainLesion/BraTS ) regarding Algorithms adult glioma segmentation Pre + Post Treatment
- formated two Warning notes - using blockquote
…ockquote - added Note with links regarding adult glioma segmentation Algothms Pre + Post Treatment - formated two Warning notes - using blockquote
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Pull Request Overview
This PR updates the README to add a new informational note with links for Adult Glioma Segmentation and reformats existing warning messages into a blockquote style.
- Added a [!NOTE] block with links for Pre-Treatment and Post-Treatment segmentation algorithms.
- Reformatted deprecation warnings for both the BraTS Preprocessor and the GUI into blockquotes.
… format of the document
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README.md
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| > [!NOTE] | ||
| > Algorithms are now available for Adult Glioma Segmentation <br> | ||
| Pre-Treatment: https://github.com/BrainLesion/BraTS?tab=readme-ov-file#adult-glioma-segmentation-pre-treatment <br> | ||
| and Post-Treatment: https://github.com/BrainLesion/BraTS?tab=readme-ov-file#adult-glioma-segmentation-post-treatment). <br> |
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There's an extra closing parenthesis on line 80 after the URL that should be removed.
| and Post-Treatment: https://github.com/BrainLesion/BraTS?tab=readme-ov-file#adult-glioma-segmentation-post-treatment). <br> | |
| and Post-Treatment: https://github.com/BrainLesion/BraTS?tab=readme-ov-file#adult-glioma-segmentation-post-treatment. <br> |
Co-authored-by: Copilot <[email protected]>
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README.md
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| ## Usage | ||
| BrainLes features [Jupyter notebook tutorials](https://github.com/BrainLesion/tutorials/tree/main/BraTS-Toolkit) for glioma segmentation with BraTS Toolkit. | ||
| BrainLes features (Jupyter notebook tutorials: https://github.com/BrainLesion/tutorials/tree/main/BraTS-Toolkit) for glioma segmentation with BraTS Toolkit. |
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The parentheses around the link description create awkward formatting. Consider using proper markdown link syntax: [Jupyter notebook tutorials](https://github.com/BrainLesion/tutorials/tree/main/BraTS-Toolkit) for better readability and consistency with markdown conventions.
| BrainLes features (Jupyter notebook tutorials: https://github.com/BrainLesion/tutorials/tree/main/BraTS-Toolkit) for glioma segmentation with BraTS Toolkit. | |
| BrainLes features [Jupyter notebook tutorials](https://github.com/BrainLesion/tutorials/tree/main/BraTS-Toolkit) for glioma segmentation with BraTS Toolkit. |
README.md
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| For segmentation, your files should be `preprocessed`, meaning they should be co-registered and skullstripped in SRI-24 space. | ||
| You can preprocess your files using [BrainLes preprocessing](https://github.com/BrainLesion/preprocessing) (recommended) or the deprecated preprocessor of BraTS Toolkit (see below). | ||
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| You can preprocess your files using BrainLes preprocessing: https://github.com/BrainLesion/preprocessing (recommended) or the deprecated preprocessor of BraTS Toolkit (see below). |
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The link formatting is inconsistent with markdown conventions. Consider using proper markdown link syntax: [BrainLes preprocessing](https://github.com/BrainLesion/preprocessing) for better readability and consistency.
| You can preprocess your files using BrainLes preprocessing: https://github.com/BrainLesion/preprocessing (recommended) or the deprecated preprocessor of BraTS Toolkit (see below). | |
| You can preprocess your files using [BrainLes preprocessing](https://github.com/BrainLesion/preprocessing) (recommended) or the deprecated preprocessor of BraTS Toolkit (see below). |
README.md
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| > WARNING: BraTS Preprocessor is deprecated. It still works, but we recommended using [BrainLes preprocessing](https://github.com/BrainLesion/preprocessing) instead, which offers much more flexibility. | ||
| > [!WARNING] | ||
| > BraTS Preprocessor is deprecated. It still works, but we recommended using BrainLes preprocessing: https://github.com/BrainLesion/preprocessing instead, which offers much more flexibility. |
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The link formatting is inconsistent with markdown conventions. Consider using proper markdown link syntax: [BrainLes preprocessing](https://github.com/BrainLesion/preprocessing) for better readability and consistency.
| > BraTS Preprocessor is deprecated. It still works, but we recommended using BrainLes preprocessing: https://github.com/BrainLesion/preprocessing instead, which offers much more flexibility. | |
| > BraTS Preprocessor is deprecated. It still works, but we recommended using BrainLes preprocessing: [BrainLes preprocessing](https://github.com/BrainLesion/preprocessing) instead, which offers much more flexibility. |
Improve formatting in README.md
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Co-authored-by: Copilot <[email protected]>
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| > WARNING: BraTS Preprocessor is deprecated. It still works, but we recommended using [BrainLes preprocessing](https://github.com/BrainLesion/preprocessing) instead, which offers much more flexibility. | ||
| > [!WARNING] | ||
| > BraTS Preprocessor is deprecated. It still works, but we recommend using [BrainLes preprocessing](https://github.com/BrainLesion/preprocessing) instead, which offers much more flexibility. |
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The word 'recommend' should be 'recommended' to maintain consistency with the original text and proper grammar.
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