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1.8 (not for merge)#481

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jefferis wants to merge 95 commits intomasternatverse/nat:masterfrom 1.8natverse/nat:1.8Copy head branch name to clipboard

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Commits on Aug 21, 2019

• skip exact md5 ndigest tests on CRAN

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• dev: ignore spare directory

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Commits on Aug 22, 2019

• upgrade roxygen

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• Fix if logical length >1 error

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• Fix CMTK/Vaa3D URLs

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• Update URLs for natverse GitHub organisation

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• Fix slow reading of neuronlistfh

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• Bump version to 1.8.13

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• Update NEWS for 1.8.13

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• update cran comments for 1.8.13 release

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• Add ORCIDs to authors

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Commits on Aug 24, 2019

• whitespace

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Commits on Feb 6, 2020

• Upgrade roxygen

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• donttest example depending on suggested package

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• update baseline of ndigest test

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• travis: switch to xenial

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Commits on Feb 7, 2020

• Bump version and news

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• update cran comments (as released)

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Commits on Sep 11, 2020

• Fix test for new behaviour of c() in R 4.1

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Commits on Sep 14, 2020

• URL updates

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Commits on Sep 22, 2020

• Fix more URLs for CRAN

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• Update news and bump version

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• update cran comments

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• git ignore CRAN-RELEASE file

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• more URL fixes from CRAN pre-test

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• Bump version for URL fixes

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Commits on Sep 25, 2020

• Update cran comments

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Commits on Aug 24, 2021

• suggest webshot2

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• roxygenise

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• fix roxygen error

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• docs: spelling

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Commits on Aug 25, 2021

• add github actions rcmd check

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• remove outdated travis

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• update to README from master + nature img fix

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• URL (inc DOI) fixes

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• Bump version, news

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• ignore .github folder when building package

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Commits on Sep 3, 2021

• redown

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• Update cran comments

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• cran comments tweaks

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• Suggest markdown package as fallback for pandoc

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• cran comment tweaks

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• conditional renderind of rgl stuff in vignette

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• redown

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• last change to cran-comments

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Commits on Sep 5, 2021

• fix conditional running of pandoc vignettes

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• bump version to 1.8.18

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• redown

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Commits on Sep 6, 2021

• finalise 1.8.18 cran comments

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Commits on Apr 4, 2022

• seglist updated to the latest igraph version

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• seglist updated to the latest igraph version - NAMESPACE

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Commits on Apr 5, 2022

• ctb added

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• fixes to make CRAN happy

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Commits on Apr 20, 2022

• Merge pull request #495 from dokato/1.8

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Commits on Jan 19, 2023

• dev: update roxygen

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Commits on Jan 20, 2023

• neimode->mode for igraph v1.3

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• replace deprecated rgl.* calls

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• rgl.pop -> pop3d

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• fix outdated teem urls

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• remove drat - webshot2 now on CRAN

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• fix neuroml urls

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• fix height of nature image in readme

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• add missing readme figures

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Commits on Jan 23, 2023

• ignore codecov config

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Commits on Jan 28, 2023

• Fix test of attribute length mismatch for new ngraph

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• remove one last rgl.* function

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• Bump version

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• Update cran comments pre-submission

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• ignore CRAN submission file

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• Fixing NEWS parse error on linux

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• bump version to 1.8.21

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• update CRAN comments for v1.8.21

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Commits on Jun 5, 2023

• Bump version

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Commits on Jun 7, 2023

• update citation to include natverse paper

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• remove broken flycircuit link

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• fix method / generic mismatch

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• export methods that check was complaining about

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• update CRAN comments for submission

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Commits on Aug 24, 2023

• Increment version number to 1.8.22.9000

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• fix bug in handling of numeric versions

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• Bump version

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Commits on Aug 25, 2023

• Fix Simple Neurite Tracer / SNT urls

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• update cran comments

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Commits on Jan 31, 2024

• rename all deprecated igraph functions

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• igraph tweaks & typos

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• igraph dfs may signal unreachable nodes with 0

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• suppress startup messages in test

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• fix new igraph imports

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• nvertices.igraph fixes vcount mode

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• Bump version to 1.8.24

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• WIP update cran comments

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• doc fixes inc \itemize lists

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• skip cmtk command line tests on cran

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• more doc fixes

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Commits on Feb 5, 2024

• update cran comments for submission

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