Merge pull request #18 from mrryf/feat/ralph-loop-integration feat: add ralph-orchestrator integration for automated build recovery

feat: add ralph-orchestrator integration for automated build recovery

feat: add PageIndex integration to Zotero sync script Extend sync_zotero.py with incremental PageIndex sync capabilities: - Add --pageindex flag to detect new papers and output index commands - Add --status flag to show indexed/pending/failed paper counts - Add --mark-indexed flag to update state after manual indexing - Add --skip-bibtex flag to run only PageIndex operations The script now tracks indexed papers in .claude/pageindex-state.json and identifies new papers by comparing Zotero library with local state. PDF attachments are discovered via Zotero API and located in local storage.

Extend sync_zotero.py with incremental PageIndex sync capabilities:
- Add --pageindex flag to detect new papers and output index commands
- Add --status flag to show indexed/pending/failed paper counts
- Add --mark-indexed flag to update state after manual indexing
- Add --skip-bibtex flag to run only PageIndex operations

The script now tracks indexed papers in .claude/pageindex-state.json
and identifies new papers by comparing Zotero library with local state.
PDF attachments are discovered via Zotero API and located in local storage.

Merge pull request #5 from mrryf/integrate-questions feat: establish CSV as single source of truth for survey items

feat: establish CSV as single source of truth for survey items

docs: comprehensive README update with webapp, docs site, and deployment info - Add SvelteKit webapp section with tech stack and features - Emphasize MkDocs documentation site with build commands - Update Quick Start to use Makefile interface - Fix project structure to reflect actual layout - Add deployment section (LaTeX PDF, Webapp, Documentation) - Update CI/CD section with all 7 test jobs - Enhance prerequisites and installation instructions - Add license section for academic research

build-150

docs: comprehensive README update with webapp, docs site, and deploym…