Issues

• get_cn_segments fails with multiple seq_types

  morinlab/GAMBLR.results#123 · Filter by author lkhilton opened on Feb 10, 2026

• get_ssm_by_region needs extra check of inputs

  morinlab/GAMBLR.results#119 · Filter by author gillissierra opened on Jul 22, 2025
  1

  

• get_coding_ssm_status include_silent_genes appears to be broken

  morinlab/GAMBLR.results#107 · Filter by author rdmorin opened on May 7, 2025

• collate_csr_results and collate_pga do not work in collate_results when from_cache=FALSE

  morinlab/GAMBLR.results#94 · Filter by author mannycruz opened on Mar 10, 2025

• get_coding_ssm_status and prettyOncoplot are not consistent in handling splice_region variants

  morinlab/GAMBLR.results#93 · Filter by author rdmorin opened on Mar 9, 2025

• Weird behaviour of get_coding_ssm_status

  morinlab/GAMBLR.results#86 · Filter by author lkhilton opened on Feb 11, 2025
  3

  

• Update collate_ancestry

  morinlab/GAMBLR.results#76 · Filter by author kmcoyle opened on Jan 24, 2025
  

• SV support is broken

  bug
  morinlab/GAMBLR.results#54 · Filter by author Kdreval opened on Feb 28, 2024
  3

  

• Add projection to get_cn_states

  morinlab/GAMBLR.results#48 · Filter by author kmcoyle opened on Feb 2, 2024

• Remove hardcoding in collate_csr_results

  morinlab/GAMBLR.results#31 · Filter by author Kdreval opened on Dec 18, 2023
  1

• Issues with the collate_sbs_results part of collate_results

  morinlab/GAMBLR.results#30 · Filter by author Kdreval opened on Dec 18, 2023
  1

• hg38 support for collate_nfkbiz_results

  enhancement
  morinlab/GAMBLR.results#29 · Filter by author Kdreval opened on Dec 18, 2023
  1