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Vectorization #171

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f3a3d69
Implemented base vectorization module. It throws NoClassDefFound and …
RamSaw Nov 20, 2018
12dd7b1
Performed refactoring: refactoring package moved from submodule featu…
RamSaw Nov 20, 2018
8197024
Merge branches 'master' and 'vectorization' of https://github.com/ml-…
RamSaw Nov 26, 2018
65348e2
Added checking for isMovable and number of vectors in the output.
RamSaw Nov 26, 2018
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4 changes: 2 additions & 2 deletions ...tion/src/main/java/org/jetbrains/research/groups/ml_methods/evaluation/ProjectLoader.java
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import com.intellij.analysis.AnalysisScope;
import com.intellij.openapi.project.Project;
import com.sixrr.metrics.utils.ProjectUtils;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringsLoader;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.readers.RefactoringsReaders;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveToClassRefactoring;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringsLoader;
import org.jetbrains.research.groups.ml_methods.refactoring.readers.RefactoringsReaders;

import java.io.IOException;
import java.nio.file.Path;
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3 changes: 1 addition & 2 deletions ...ring/JBRefactoringTextRepresentation.java → ...ring/JBRefactoringTextRepresentation.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring;
package org.jetbrains.research.groups.ml_methods.refactoring;

import com.intellij.psi.PsiClass;
import com.intellij.psi.PsiMethod;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;

import java.util.Arrays;
import java.util.List;
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3 changes: 1 addition & 2 deletions ...g/JMoveRefactoringTextRepresentation.java → ...g/JMoveRefactoringTextRepresentation.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring;
package org.jetbrains.research.groups.ml_methods.refactoring;

import com.intellij.psi.PsiClass;
import com.intellij.psi.PsiMethod;
import com.sixrr.metrics.utils.MethodUtils;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;

import java.util.List;

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3 changes: 1 addition & 2 deletions ...toring/RefactoringTextRepresentation.java → ...toring/RefactoringTextRepresentation.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring;
package org.jetbrains.research.groups.ml_methods.refactoring;

import com.intellij.psi.PsiClass;
import com.intellij.psi.PsiMethod;
import com.intellij.psi.PsiParameter;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;

import java.util.ArrayList;
import java.util.List;
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2 changes: 1 addition & 1 deletion ...raction/refactoring/RefactoringUtils.java → ...methods/refactoring/RefactoringUtils.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring;
package org.jetbrains.research.groups.ml_methods.refactoring;

import com.intellij.psi.PsiClass;
import com.intellij.psi.PsiMethod;
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3 changes: 1 addition & 2 deletions ...ction/refactoring/RefactoringsFinder.java → ...thods/refactoring/RefactoringsFinder.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring;
package org.jetbrains.research.groups.ml_methods.refactoring;

import com.google.common.collect.Sets;
import com.intellij.analysis.AnalysisScope;
Expand All @@ -8,7 +8,6 @@
import com.sixrr.metrics.utils.MethodUtils;
import org.apache.log4j.Logger;
import org.jetbrains.annotations.NotNull;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;

import java.util.*;
import java.util.stream.Collectors;
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5 changes: 2 additions & 3 deletions ...ction/refactoring/RefactoringsLoader.java → ...thods/refactoring/RefactoringsLoader.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring;
package org.jetbrains.research.groups.ml_methods.refactoring;

import com.intellij.analysis.AnalysisScope;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.readers.RefactoringsReader;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;
import org.jetbrains.research.groups.ml_methods.refactoring.readers.RefactoringsReader;

import java.io.IOException;
import java.nio.file.Path;
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6 changes: 3 additions & 3 deletions ...raction/refactoring/readers/JBReader.java → ...methods/refactoring/readers/JBReader.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring.readers;
package org.jetbrains.research.groups.ml_methods.refactoring.readers;

import com.google.common.reflect.TypeToken;
import com.google.gson.Gson;
import com.google.gson.GsonBuilder;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.JBRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.JBRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringTextRepresentation;

import java.io.BufferedReader;
import java.io.IOException;
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6 changes: 3 additions & 3 deletions ...tion/refactoring/readers/JMoveReader.java → ...hods/refactoring/readers/JMoveReader.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring.readers;
package org.jetbrains.research.groups.ml_methods.refactoring.readers;

import org.jetbrains.research.groups.ml_methods.extraction.refactoring.JMoveRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.JMoveRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringTextRepresentation;

import java.io.BufferedReader;
import java.io.IOException;
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4 changes: 2 additions & 2 deletions ...factoring/readers/RefactoringsReader.java → ...factoring/readers/RefactoringsReader.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring.readers;
package org.jetbrains.research.groups.ml_methods.refactoring.readers;

import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringTextRepresentation;

import java.io.IOException;
import java.io.InputStream;
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2 changes: 1 addition & 1 deletion ...actoring/readers/RefactoringsReaders.java → ...actoring/readers/RefactoringsReaders.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring.readers;
package org.jetbrains.research.groups.ml_methods.refactoring.readers;

import java.util.Arrays;
import java.util.List;
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6 changes: 3 additions & 3 deletions ...raction/refactoring/writers/JBWriter.java → ...methods/refactoring/writers/JBWriter.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring.writers;
package org.jetbrains.research.groups.ml_methods.refactoring.writers;

import com.google.gson.Gson;
import com.google.gson.GsonBuilder;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.JBRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.JBRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringTextRepresentation;

import java.io.IOException;
import java.io.OutputStream;
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6 changes: 3 additions & 3 deletions ...tion/refactoring/writers/JMoveWriter.java → ...hods/refactoring/writers/JMoveWriter.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring.writers;
package org.jetbrains.research.groups.ml_methods.refactoring.writers;

import org.jetbrains.research.groups.ml_methods.extraction.refactoring.JMoveRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.JMoveRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringTextRepresentation;

import java.io.BufferedWriter;
import java.io.IOException;
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4 changes: 2 additions & 2 deletions ...factoring/writers/RefactoringsWriter.java → ...factoring/writers/RefactoringsWriter.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring.writers;
package org.jetbrains.research.groups.ml_methods.refactoring.writers;

import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringTextRepresentation;

import java.io.IOException;
import java.io.OutputStream;
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2 changes: 1 addition & 1 deletion ...actoring/writers/RefactoringsWriters.java → ...actoring/writers/RefactoringsWriters.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring.writers;
package org.jetbrains.research.groups.ml_methods.refactoring.writers;

import java.util.Arrays;
import java.util.List;
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2 changes: 1 addition & 1 deletion core/src/main/java/org/jetbrains/research/groups/ml_methods/utils/RefactoringUtil.java
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Expand Up @@ -37,7 +37,7 @@ public static List<CalculatedRefactoring> filter(List<CalculatedRefactoring> ref
return validRefactorings;
}

private static boolean isMovable(PsiElement psiElement) {
public static boolean isMovable(PsiElement psiElement) {
if (psiElement instanceof PsiField) {
return MethodUtils.isStatic((PsiField) psiElement);
} else if (psiElement instanceof PsiMethod) {
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3 changes: 1 addition & 2 deletions ...n/refactoring/RefactoringsFinderTest.java → ...s/refactoring/RefactoringsFinderTest.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring;
package org.jetbrains.research.groups.ml_methods.refactoring;

import org.jetbrains.research.groups.ml_methods.ScopeAbstractTest;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;

import java.util.Arrays;
import java.util.Collections;
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5 changes: 2 additions & 3 deletions ...n/refactoring/RefactoringsLoaderTest.java → ...s/refactoring/RefactoringsLoaderTest.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring;
package org.jetbrains.research.groups.ml_methods.refactoring;

import org.jetbrains.research.groups.ml_methods.ScopeAbstractTest;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.readers.RefactoringsReaders;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;
import org.jetbrains.research.groups.ml_methods.refactoring.readers.RefactoringsReaders;

import java.io.IOException;
import java.nio.file.Paths;
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6 changes: 3 additions & 3 deletions ...ion/refactoring/readers/JBReaderTest.java → ...ods/refactoring/readers/JBReaderTest.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring.readers;
package org.jetbrains.research.groups.ml_methods.refactoring.readers;

import org.jetbrains.research.groups.ml_methods.extraction.refactoring.JBRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.JBRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringTextRepresentation;
import org.junit.Test;

import java.io.FileInputStream;
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6 changes: 3 additions & 3 deletions .../refactoring/readers/JMoveReaderTest.java → .../refactoring/readers/JMoveReaderTest.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring.readers;
package org.jetbrains.research.groups.ml_methods.refactoring.readers;

import org.jetbrains.research.groups.ml_methods.extraction.refactoring.JMoveRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.JMoveRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringTextRepresentation;
import org.junit.Test;

import java.io.FileInputStream;
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6 changes: 3 additions & 3 deletions ...ion/refactoring/writers/JBWriterTest.java → ...ods/refactoring/writers/JBWriterTest.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring.writers;
package org.jetbrains.research.groups.ml_methods.refactoring.writers;

import org.jetbrains.research.groups.ml_methods.extraction.refactoring.JBRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.JBRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringTextRepresentation;
import org.junit.Test;

import java.io.File;
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6 changes: 3 additions & 3 deletions .../refactoring/writers/JMoveWriterTest.java → .../refactoring/writers/JMoveWriterTest.java
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package org.jetbrains.research.groups.ml_methods.extraction.refactoring.writers;
package org.jetbrains.research.groups.ml_methods.refactoring.writers;

import org.jetbrains.research.groups.ml_methods.extraction.refactoring.JMoveRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.JMoveRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringTextRepresentation;
import org.junit.Test;

import java.io.File;
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0 ...raction/src/test/resources/JBRefactorings → core/src/test/resources/JBRefactorings
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0 ...tion/src/test/resources/JMoveRefactorings → core/src/test/resources/JMoveRefactorings
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0 ...sources/testCases/findRefactorings/A.java → ...sources/testCases/findRefactorings/A.java
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0 ...sources/testCases/findRefactorings/B.java → ...sources/testCases/findRefactorings/B.java
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0 ...resources/testCases/findRefactorings/good → ...resources/testCases/findRefactorings/good
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4 changes: 2 additions & 2 deletions ...jetbrains/research/groups/ml_methods/extraction/FeaturesExtractionApplicationStarter.java
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Expand Up @@ -14,9 +14,9 @@
import org.jetbrains.research.groups.ml_methods.extraction.features.extractors.*;
import org.jetbrains.research.groups.ml_methods.extraction.features.vector.FeatureVector;
import org.jetbrains.research.groups.ml_methods.extraction.features.vector.VectorSerializer;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringsLoader;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.readers.RefactoringsReaders;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringsLoader;
import org.jetbrains.research.groups.ml_methods.refactoring.readers.RefactoringsReaders;

import java.io.IOException;
import java.nio.file.Path;
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10 changes: 5 additions & 5 deletions ...java/org/jetbrains/research/groups/ml_methods/extraction/FormatterApplicationStarter.java
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import org.apache.log4j.Logger;
import org.apache.log4j.PatternLayout;
import org.jetbrains.annotations.NotNull;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringsLoader;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.readers.RefactoringsReader;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.readers.RefactoringsReaders;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.writers.RefactoringsWriter;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.writers.RefactoringsWriters;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringsLoader;
import org.jetbrains.research.groups.ml_methods.refactoring.readers.RefactoringsReader;
import org.jetbrains.research.groups.ml_methods.refactoring.readers.RefactoringsReaders;
import org.jetbrains.research.groups.ml_methods.refactoring.writers.RefactoringsWriter;
import org.jetbrains.research.groups.ml_methods.refactoring.writers.RefactoringsWriters;

import java.nio.file.Path;
import java.nio.file.Paths;
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2 changes: 1 addition & 1 deletion ...rains/research/groups/ml_methods/generation/RefactoringsGenerationApplicationStarter.java
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import org.apache.log4j.Logger;
import org.apache.log4j.PatternLayout;
import org.jetbrains.annotations.NotNull;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.writers.RefactoringsWriters;
import org.jetbrains.research.groups.ml_methods.generation.constraints.GenerationConstraintsFactory;
import org.jetbrains.research.groups.ml_methods.generation.constraints.GenerationConstraintsFactory.GenerationConstraintType;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;
import org.jetbrains.research.groups.ml_methods.refactoring.writers.RefactoringsWriters;
import org.jetbrains.research.groups.ml_methods.utils.PSIUtil;

import java.io.IOException;
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4 changes: 2 additions & 2 deletions ...t/java/org/jetbrains/research/groups/ml_methods/generation/RefactoringsGeneratorTest.java
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Expand Up @@ -2,11 +2,11 @@

import com.intellij.analysis.AnalysisScope;
import org.jetbrains.research.groups.ml_methods.ScopeAbstractTest;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.JBRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.extraction.refactoring.RefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.generation.constraints.GenerationConstraintsFactory;
import org.jetbrains.research.groups.ml_methods.generation.constraints.GenerationConstraintsFactory.GenerationConstraintType;
import org.jetbrains.research.groups.ml_methods.refactoring.JBRefactoringTextRepresentation;
import org.jetbrains.research.groups.ml_methods.refactoring.MoveMethodRefactoring;
import org.jetbrains.research.groups.ml_methods.refactoring.RefactoringTextRepresentation;

import java.util.Arrays;
import java.util.Collections;
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2 changes: 2 additions & 0 deletions settings.gradle
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rootProject.name = 'ArchitectureReloaded'

include 'ArchitectureReloaded', 'core', 'MetricsReloaded', 'MetricsReloaded:utils', 'MetricsReloaded:openapi', 'MetricsReloaded:stockmetrics', 'features-extraction', 'refactorings-generation', 'algorithms-evaluation', 'validator'
include 'vectorization'

35 changes: 35 additions & 0 deletions vectorization/build.gradle
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plugins {
id 'java'
}

repositories {
mavenCentral()
}

apply plugin: 'idea'

dependencies {
compile project(':features-extraction')
compile project(':MetricsReloaded')
compile project(':core')
}

task runVectorization(dependsOn: runIde) {}

gradle.taskGraph.whenReady { graph ->
if (graph.hasTask(runVectorization)) {
runIde.args 'vectorization', "$pathToDataset", "$vectorizationType"
runIde.jvmArgs '-Djava.awt.headless=true', '-Xmx4096m'
}
}
version 'unspecified'

sourceCompatibility = 1.8

repositories {
mavenCentral()
}

dependencies {
testCompile group: 'junit', name: 'junit', version: '4.12'
}
67 changes: 67 additions & 0 deletions ...in/java/org/jetbrains/research/groups/ml_methods/vectorization/AbstractVectorization.java
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package org.jetbrains.research.groups.ml_methods.vectorization;

import com.google.gson.Gson;
import com.google.gson.GsonBuilder;
import com.intellij.analysis.AnalysisScope;
import com.intellij.openapi.project.Project;
import com.sixrr.metrics.utils.ProjectUtils;
import org.apache.log4j.Logger;
import org.jetbrains.annotations.NotNull;

import java.io.File;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.Arrays;
import java.util.Collections;
import java.util.List;
import java.util.Objects;

abstract public class AbstractVectorization implements Vectorization {
private static final @NotNull
Gson JSON_CONVERTER = new GsonBuilder().setPrettyPrinting().create();
private static final @NotNull
Logger LOGGER = Logger.getLogger(VectorizationApplicationStarter.class);

@Override
public void vectorizeAndSave(@NotNull Path datasetPath) {
for (File projectPath : Objects.requireNonNull(datasetPath.resolve("projects").toFile().listFiles())) {
try {
if (!projectPath.isDirectory()) {
throw new IOException(projectPath + "is not a directory!");
}
vectorizeSingleProject(projectPath.toPath(), projectPath.toPath());
} catch (IOException e) {
String errorMessage = "Error during saving vectorization result to folder " + projectPath;
VectorizationApplicationStarter.logError(e, LOGGER, errorMessage);
VectorizationApplicationStarter.showError(e, errorMessage);
} catch (CannotOpenProjectException e) {
String errorMessage = "Error during opening project: " + projectPath;
VectorizationApplicationStarter.logError(e, LOGGER, errorMessage);
VectorizationApplicationStarter.showError(e, errorMessage);
}
}
}

@Override
public void vectorizeSingleProject(@NotNull Path projectPath, @NotNull Path pathToSaveResults)
throws IOException, CannotOpenProjectException {
List<? extends Vector> vectors = vectorize(projectPath);
Files.write(pathToSaveResults.resolve("vector"), Arrays.asList(String.valueOf(vectors.size()), JSON_CONVERTER.toJson(vectors)));
}

@NotNull
@Override
public List<? extends Vector> vectorize(@NotNull Path projectPath) throws CannotOpenProjectException {
projectPath = projectPath.resolve("project");
final Project project = ProjectUtils.loadProjectWithAllDependencies(projectPath);
if (project == null) {
final String errorMessage = "Cannot open project. Check that path is correct. Project: " + projectPath;
throw new CannotOpenProjectException(errorMessage);
}
return vectorize(new AnalysisScope(project));
}

@NotNull
abstract protected List<? extends Vector> vectorize(@NotNull AnalysisScope scope);
}
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