ReMSim

Reference-based bisulfite sequencing read simulator.

Requirements

• Python >=3.6
• Biopython

Usage

python remsim.py
usage: remsim.py [-h] -c CONFIG

Reference Methylation Simulator

optional arguments:
  -h, --help            show this help message and exit

required arguments:
  -c CONFIG, --config CONFIG
                        Configuration JSON file path.

  -f FUNCTION, --function FUNCTION
                        Function to perform.

TODO

• Logging module
• Object reprs
• More intuitive configuration for simulated sequencing depth/coverage
• More detailed description in README