Restores MPIFLAGS configuration on non-windows platforms. #1572
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| name: mcxtrace-basictest | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '55 23 * * 0' # 23:55 every Sunday | |
| workflow_dispatch: | |
| inputs: | |
| manual-debugging: | |
| type: boolean | |
| description: Launch manual debugging tmate for inspection (automatic in case of errors) | |
| default: false | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { os: ubuntu-24.04, CC: gcc-13, CXX: g++-13, python: '3.12', mpi: 'openmpi' } | |
| - { os: ubuntu-24.04, CC: clang, CXX: clang++, python: '3.12', mpi: 'openmpi' } | |
| - { os: ubuntu-22.04, CC: clang, CXX: clang++, python: '3.11', mpi: 'openmpi' } | |
| - { os: ubuntu-22.04, CC: gcc-12, CXX: g++-12, python: '3.11', mpi: 'openmpi' } | |
| - { os: macos-13, CC: clang, CXX: clang++, python: "3.11", mpi: 'mpich' } | |
| - { os: macos-14, CC: clang, CXX: clang++, python: "3.12", mpi: 'mpich' } | |
| - { os: macos-15, CC: clang, CXX: clang++, python: "3.13", mpi: 'mpich' } | |
| - { os: macos-13, CC: clang, CXX: clang++, python: "3.11", mpi: 'openmpi' } | |
| - { os: macos-14, CC: clang, CXX: clang++, python: "3.12", mpi: 'openmpi' } | |
| - { os: macos-15, CC: clang, CXX: clang++, python: "3.13", mpi: 'openmpi' } | |
| #- { os: windows-latest, CC: gcc, CXX: g++, python: "3.12", mpi: 'msmpi' } | |
| name: ${{ matrix.os }}.${{ matrix.CC }}.${{ matrix.mpi }}.python-${{ matrix.python }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CC: ${{ matrix.CC }} | |
| CXX: ${{ matrix.CXX }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| path: src | |
| - name: Setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Setup MPI | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: ${{ matrix.mpi }} | |
| - name: Setup Bison (macOS) | |
| id: setup-flex-bison-macos | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install bison flex | |
| - name: Setup Bison (Windows) | |
| id: setup-flex-bison-Windows | |
| if: runner.os == 'Windows' | |
| run: | | |
| choco install winflexbison3 | |
| pip install mslex | |
| - name: Check versions | |
| id: version-checks | |
| run: | | |
| which python3 | |
| python3 --version | |
| which cmake | |
| cmake --version | |
| #NB: bison and flex in path are actually too old, on mac we | |
| #inject these via a brew keg later | |
| - name: Configure build and install mcxtrace | |
| id: mcxtrace-install | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then export SDKROOT=$(xcrun --sdk macosx --show-sdk-path); fi | |
| set -e | |
| set -u | |
| set -x | |
| mkdir build_mcxtrace | |
| cd build_mcxtrace | |
| export EXTRA_ARGS_FOR_CMAKE="" | |
| if [ "$RUNNER_OS" == "macOS" ] && [ -f "/opt/homebrew/opt/flex/bin/flex" ]; then export HOMEBRW="/opt/homebrew/opt"; fi | |
| if [ "$RUNNER_OS" == "macOS" ] && [ -f "/usr/local/opt/flex/bin/flex" ]; then export HOMEBRW="/usr/local/opt"; fi | |
| if [ "$RUNNER_OS" == "macOS" ]; then export EXTRA_ARGS_FOR_CMAKE="-DBISON_EXECUTABLE=${HOMEBRW}/bison/bin/bison -DFLEX_EXECUTABLE=${HOMEBRW}/flex/bin/flex"; fi | |
| if [ "$RUNNER_OS" == "Linux" ]; then export EXTRA_ARGS_FOR_CMAKE="-DNEXUSLIB=/usr/lib -DNEXUSINCLUDE=/usr/include/nexus"; fi | |
| if [ "$RUNNER_OS" == "Windows" ]; then export MPIINC=`cygpath -m -s "${MSMPI_INC}"`; export MPILIB=`cygpath -m -s "${MSMPI_LIB64}"`; export EXTRA_ARGS_FOR_CMAKE="-DMPILIBDIR=${MPILIB} -DMPIINCLUDEDIR=${MPIINC}"; fi | |
| cmake \ | |
| -DCMAKE_INSTALL_PREFIX=../install_mcxtrace \ | |
| -S ../src \ | |
| -G "Unix Makefiles" \ | |
| -DMCVERSION="3.99.99" \ | |
| -DMCCODE_BUILD_CONDA_PKG=OFF \ | |
| -DBUILD_SHARED_LIBS=ON \ | |
| -DCMAKE_INSTALL_LIBDIR=lib \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DBUILD_MCXTRACE=ON \ | |
| -DMCCODE_USE_LEGACY_DESTINATIONS=OFF \ | |
| -DBUILD_TOOLS=ON \ | |
| -DENABLE_COMPONENTS=ON \ | |
| -DENSURE_MCPL=ON \ | |
| -DENSURE_NCRYSTAL=OFF \ | |
| -DENABLE_CIF2HKL=OFF \ | |
| -DENABLE_NEUTRONICS=OFF \ | |
| ${EXTRA_ARGS_FOR_CMAKE} | |
| cmake --build . --config Release | |
| cmake --build . --target install --config Release | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export MCXTRACE_EXECUTABLE="mcxtrace.exe" | |
| export MXRUN_EXECUTABLE="mxrun.bat" | |
| cd ../install_mcxtrace/ | |
| TOPDIR=`cygpath -m $PWD` | |
| cd - | |
| sed 's+@CPACK_NSIS_INSTALL_ROOT@+'${TOPDIR}'+g' ../src/3rdparty/mcpl-package/batches/mcpl-config.bat.in > ../install_mcxtrace/bin/mcpl-config.bat | |
| cat ../install_mcxtrace/bin/mcpl-config.bat | |
| fi | |
| test -f "../install_mcxtrace/bin/${MCXTRACE_EXECUTABLE}" | |
| test -f "../install_mcxtrace/bin/${MXRUN_EXECUTABLE}" | |
| test -f "../install_mcxtrace/share/mcxtrace/tools/Python/mccodelib/__init__.py" | |
| test -d "../install_mcxtrace/share/mcxtrace/resources/data" | |
| if [ "${{ matrix.mpi }}" == "openmpi" ]; then sed -i.bak 's/mpirun/mpirun\ --mca\ btl\ self,vader,tcp/g' ../install_mcxtrace/share/mcxtrace/tools/Python/mccodelib/mccode_config.json ; fi | |
| echo ******************************************************************************* | |
| echo Resulting mccode_config.json: | |
| echo ******************************************************************************* | |
| cat ../install_mcxtrace/share/mcxtrace/tools/Python/mccodelib/mccode_config.json | |
| echo ******************************************************************************* | |
| - name: Pip install various | |
| id: pip-install | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| python3 -mpip install PyYAML ply McStasscript | |
| fi | |
| if [ "$RUNNER_OS" == "macOS" ]; | |
| then | |
| python3 -mpip install PyYAML ply McStasScript --break-system-packages | |
| fi | |
| if [ "$RUNNER_OS" == "Linux" ]; | |
| then | |
| python3 -mpip install PyYAML ply McStasscript | |
| fi | |
| - name: Launch JJ_SAXS instrument | |
| id: JJ_SAXS-basic | |
| # Status: Works on all systems | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MCXTRACE_PYGEN_EXECUTABLE="mcxtrace-pygen" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export MCXTRACE_EXECUTABLE="mcxtrace.exe" | |
| export MCXTRACE_PYGEN_EXECUTABLE="mcxtrace-pygen.exe" | |
| export MXRUN_EXECUTABLE="mxrun.bat" | |
| fi | |
| test -f ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} | |
| ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} --version | |
| mkdir run_JJ_SAXS && cd run_JJ_SAXS | |
| cp ../install_mcxtrace/share/mcxtrace/resources/examples/SAXSLAB/JJ_SAXS/JJ_SAXS.instr . | |
| ../install_mcxtrace/bin/${MXRUN_EXECUTABLE} JJ_SAXS.instr pin2_pos=0.2 pin3_pos=0.4 optic_L=0.1 sample_pos=0.2 detector_pos=2 | |
| ../install_mcxtrace/bin/${MCXTRACE_PYGEN_EXECUTABLE} JJ_SAXS.instr | |
| - name: Launch JJ_SAXS instrument (MPI) | |
| id: JJ_SAXS-mpi | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MCXTRACE_PYGEN_EXECUTABLE="mcxtrace-pygen" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export MCXTRACE_EXECUTABLE="mcxtrace.exe" | |
| export MXRUN_EXECUTABLE="mxrun.bat" | |
| fi | |
| test -f ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} | |
| ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} --version | |
| mkdir run_JJ_SAXS_mpi && cd run_JJ_SAXS_mpi | |
| cp ../install_mcxtrace/share/mcxtrace/resources/examples/SAXSLAB/JJ_SAXS/JJ_SAXS.instr . | |
| ../install_mcxtrace/bin/${MXRUN_EXECUTABLE} --verbose --mpi=2 JJ_SAXS.instr pin2_pos=0.2 pin3_pos=0.4 optic_L=0.1 sample_pos=0.2 detector_pos=2 | |
| - name: Launch MCPL test instrument | |
| id: mcpl-test | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export MCXTRACE_EXECUTABLE="mcxtrace.exe" | |
| export MXRUN_EXECUTABLE="mxrun.bat" | |
| fi | |
| export PATH=${PATH}:${PWD}/install_mcxtrace/bin/:${PWD}/install_mcxtrace/mcxtrace/3.99.99/bin/ | |
| test -f ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} | |
| ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} --version | |
| mkdir run_Test_MCPL_input && cd run_Test_MCPL_input | |
| cp ../install_mcxtrace/share/mcxtrace/resources/examples/Tests_MCPL_etc/Test_MCPL_input/Test_MCPL_input.instr . | |
| ../install_mcxtrace/bin/${MXRUN_EXECUTABLE} Test_MCPL_input.instr repeat=10 | |
| - name: Launch MCPL test instrument (MPI) | |
| id: mcpl-test-mpi | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| export MCXTRACE_EXECUTABLE="mcxtrace" | |
| export MXRUN_EXECUTABLE="mxrun" | |
| if [ "$RUNNER_OS" == "Windows" ]; | |
| then | |
| export MCXTRACE_EXECUTABLE="mcxtrace.exe" | |
| export MXRUN_EXECUTABLE="mxrun.bat" | |
| fi | |
| export PATH=${PATH}:${PWD}/install_mcxtrace/bin/:${PWD}/install_mcxtrace/mcxtrace/3.99.99/bin/ | |
| test -f ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} | |
| ./install_mcxtrace/bin/${MCXTRACE_EXECUTABLE} --version | |
| mkdir run_Test_MCPL_input_mpi && cd run_Test_MCPL_input_mpi | |
| cp ../install_mcxtrace/share/mcxtrace/resources/examples/Tests_MCPL_etc/Test_MCPL_input/Test_MCPL_input.instr . | |
| ../install_mcxtrace/bin/${MXRUN_EXECUTABLE} --verbose --mpi=2 Test_MCPL_input.instr repeat=20 | |
| - name: 'Tar output files' | |
| id: tar-package | |
| if: always() | |
| run: | | |
| set -e | |
| set -u | |
| set -x | |
| tar cvfz mcxtrace-${{ matrix.os }}.${{ matrix.CC }}.${{ matrix.mpi }}.python-${{ matrix.python }}_output.tgz run_* | |
| - name: 'Upload Artifact' | |
| id: tar-upload | |
| uses: actions/upload-artifact@v4 | |
| if: always() | |
| with: | |
| name: mcxtrace-artefacts-${{ matrix.os }}.${{ matrix.CC }}.${{ matrix.mpi }}.python-${{ matrix.python }} | |
| path: "mcxtrace-${{ matrix.os }}.${{ matrix.CC }}.${{ matrix.mpi }}.python-${{ matrix.python }}_output.tgz" | |
| - name: Setup tmate session for manual debugging | |
| uses: mxschmitt/action-tmate@v3 | |
| if: always() && (inputs.manual-debugging == true && steps.tar-package.outcome != 'success') | |
| with: | |
| limit-access-to-actor: true |