v0.3.2.1

0.3.0

• rewrote ChIP-seq workflow completely including wrapper script ChIP-seq
• added histoneHMM for calling broadly enriched regions
• added MACS2 peak quality controls
• revised example.config.yaml files
• moved function get_fragment_length() to common_functions.py
• positional instead of required optional command line arguments
• many small changes
  0.3.1
• run Picard quality control on unfiltered BAM files
• added --gcbias parameter to DNA-mapping wrapper script to run computeGCBias optionally
• replaced --input-dir and --output-dir by --working-dir parameter in ChIP-seq
  wrapper script to specify the working directory, which is output directory of
  the pipeline and must also contain the DNA-mapping pipeline output files
• bugfixes
  0.3.2
• added generation of QC reports for all samples to ChIP-seq pipeline
• added consistency check for ChIP-seq pipeline whether all required input files exist for all samples
• added peak count to MACS2 peak quality controls
  **0.3.2.1 **
• added documentation to README.md
• moved R library