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1. MIMEAnTo MIMEAnTo Public

   C++ 2

2. sam2counts sam2counts Public

   C++ 1

3. MIMEAn2 MIMEAn2 Public

   C++ 1

4. MIMEplot MIMEplot Public

   R routines for plotting the output tables of MIMEAnTo/MIMEAn2

   R

5. MIMEqualityCheck MIMEqualityCheck Public

   Plots for the sanity check of MIME data, including coverage, mutation rate, etc.

   R

6. countTSubstitutions countTSubstitutions Public

   C++