Update dependencies and LinkML version #209
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While I was working on a LinkML model update, I noticed that the
pyyamlversion in the Poetry lock file had a known bug and that the LinkML dependencies were outdated.I started by updating the Poetry lock file to retrieve the latest versions of the dependencies but this caused an issue with default values in the
meta.yamlfile as LinkML generators now raise an error when the default value isn't valid.I then set out to fix those default values. I noticed that these default values were just ignored by the previous versions of the LinkML generator as they would fail silently so I removed them which doesn't have any effect on the generated output from what I saw.
This is a bold change so I need all the pairs of eyes I can get on this 😄
PS: this also allows the usage of Python 3.12 😇