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Li Lab McGill

McGill Computational Biology and Machine Learning Group

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  1. mixehr mixehr Public

    C++ 16 2

  2. singlecell-deepfeature singlecell-deepfeature Public

    Single Cell Generative Adversarial Network (scGAN)

    Jupyter Notebook 15 5

  3. GAT-ETM GAT-ETM Public

    "Modeling electronic health record data using an end-to-end knowledge-graph-informed topic model" paper on Sci Rep (2022)

    Python 12

  4. BiTimelyGPT BiTimelyGPT Public

    Code for the paper "Bidirectional Generative Pre-training for Improving Healthcare Time-series Representation Learning"

    Python 9 1

  5. gtm-decon gtm-decon Public

    Python 8 4

  6. covid19_media covid19_media Public

    Python 6 2

Repositories

Showing 10 of 35 repositories
  • ECLARE Public
    li-lab-mcgill/ECLARE’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 5, 2026
  • bcnmf Public

    Disentangling Shared and Target-Enriched Topics via Background-Contrastive Nonnegative Matrix Factorization

    li-lab-mcgill/bcnmf’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 5, 2026
  • SpaTM Public

    Topic Models for Spatially Informed Transcriptomic Analyses

    li-lab-mcgill/SpaTM’s past year of commit activity
    R 2 MIT 0 0 0 Updated Feb 19, 2026
  • gtm-decon Public
    li-lab-mcgill/gtm-decon’s past year of commit activity
    Python 8 GPL-3.0 4 0 0 Updated Feb 13, 2026
  • cgpse Public Forked from dorukcakmakci/cgpse

    Source code for "DNA-aware evaluation and debiasing of sequence-to-function models"

    li-lab-mcgill/cgpse’s past year of commit activity
    Python 0 1 0 0 Updated Jan 26, 2026
  • penprs Public Forked from shz9/penprs

    Penalized Regression for Inference of Polygenic Risk Scores

    li-lab-mcgill/penprs’s past year of commit activity
    Python 2 MIT 3 0 0 Updated Nov 30, 2025
  • miRformer Public
    li-lab-mcgill/miRformer’s past year of commit activity
    Python 0 0 0 0 Updated Nov 26, 2025
  • TimelyGPT Public

    Public code for ACM-BCB 2024 paper TimelyGPT

    li-lab-mcgill/TimelyGPT’s past year of commit activity
    Python 4 1 0 0 Updated Oct 12, 2025
  • MixEHR-SAGE Public
    li-lab-mcgill/MixEHR-SAGE’s past year of commit activity
    Python 0 1 0 0 Updated Jun 4, 2025
  • TrajGPT Public

    Public code for TrajGPT model

    li-lab-mcgill/TrajGPT’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 19, 2025
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