A small cell dataset with overlapped labels.
Used with https://github.com/kirkegaardlab/diffusionsplit for the paper Spontaneous breaking of symmetry in overlapping cell instance segmentation using diffusion models.
Download this repository and place the original cellpose dataset (downloadable from https://www.cellpose.org/dataset) in the cellposedataset folder.
Run python overlap_dataset.py and the dataset is now available in the folder overlapdataset.
Note that there are multiple label files per image in order to account for overlapping masks.