Phage-bacteria interaction networks

Analysis of viral community from lake champlain and compare with bacterial community

Name	Name	Last commit message	Last commit date
Latest commit kiristern import using new df Apr 21, 2021 1d38df2 · Apr 21, 2021 History 206 Commits
data	data	cleanup/move script to folders	Apr 21, 2021
scraps	scraps	cleanup/move script to folders	Apr 21, 2021
Initialize.R	Initialize.R	write filt_vir.txt file with proper formatting for Rare.R script	May 26, 2020
README.md	README.md	Update README.md	Mar 19, 2020
Rare.R	Rare.R	filter out low ab ASV = 0	Apr 13, 2021
bipartite.R	bipartite.R	edits....	Apr 21, 2021
correlation_plot.R	correlation_plot.R	edits....	Apr 21, 2021
correlations.R	correlations.R	edits....	Apr 21, 2021
cutadapt_terminal_version.R	cutadapt_terminal_version.R	upload scripts	Jan 31, 2020
cyano.R	cyano.R	edits....	Apr 21, 2021
cyano_meta.R	cyano_meta.R	edits....	Apr 21, 2021
evaluate_errors.R	evaluate_errors.R	upload scripts	Jan 31, 2020
gendist_corr.cov.R	gendist_corr.cov.R	import using new df	Apr 21, 2021
helli_filt.R	helli_filt.R	change name of function	Jan 26, 2021
helli_transf.R	helli_transf.R	new scripts for better organization	Jan 26, 2021
lomb.R	lomb.R	lomb for viral seasonality	Mar 31, 2021
metadata.R	metadata.R	fix microcystin merge	Nov 25, 2020
no_trans_bact.R	no_trans_bact.R	edits....	Apr 21, 2021
no_transf.R	no_transf.R	use filtered phyloseq	Apr 21, 2021
remove_primers.R	remove_primers.R	upload scripts	Jan 31, 2020
spiec_viral-viral.R	spiec_viral-viral.R	use filtered phyloseq	Apr 21, 2021
spieceasi.R	spieceasi.R	edits....	Apr 21, 2021
ttest.R	ttest.R	check significance between bloom/no bloom richness	Apr 2, 2020
vircyanCovFasta.R	vircyanCovFasta.R	select asv's to blast .fa files	Apr 21, 2021

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