Skip to content
@kiharalab

Kihara Protein Bioinformatics Laboratory

Software developed in the Kihara Lab

Popular repositories Loading

  1. ACC-UNet ACC-UNet Public

    ACC-UNet is A Completely Convolutional UNet model inspired from transformer-based UNets

    Python 115 14

  2. GNN_DOVE GNN_DOVE Public

    Code for "Protein Docking Model Evaluation by Graph Neural Networks"

    Python 59 22

  3. DOVE DOVE Public

    A Deep-learning based dOcking decoy eValuation mEthod

    Python 56 12

  4. DiffModeler DiffModeler Public

    DiffModeler: a diffusion model based protein complex structure modeling tool.

    Python 49 5

  5. NuFold NuFold Public

    NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation

    Jupyter Notebook 31 5

  6. CryoREAD CryoREAD Public

    CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.

    Python 28 4

Repositories

Showing 10 of 45 repositories
  • NuFold Public

    NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation

    kiharalab/NuFold’s past year of commit activity
    Jupyter Notebook 31 GPL-3.0 5 0 0 Updated Apr 2, 2025
  • EQAFold_public Public

    Public Release of EQAfold

    kiharalab/EQAFold_public’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Mar 30, 2025
  • DiffModeler Public

    DiffModeler: a diffusion model based protein complex structure modeling tool.

    kiharalab/DiffModeler’s past year of commit activity
    Python 49 5 0 0 Updated Mar 20, 2025
  • EM-GAN Public

    EM-GAN is a computational tool, which enables capturing protein structure information from cryo-EM maps more effectively than raw maps. It is based on 3D deep learning. It is aimed to help protein structure modeling from cryo-EM maps.

    kiharalab/EM-GAN’s past year of commit activity
    Jupyter Notebook 14 GPL-3.0 7 3 0 Updated Mar 4, 2025
  • DAQ Public

    DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps

    kiharalab/DAQ’s past year of commit activity
    C 16 GPL-3.0 2 0 0 Updated Feb 28, 2025
  • DAQ-Refine Public
    kiharalab/DAQ-Refine’s past year of commit activity
    Jupyter Notebook 6 1 0 0 Updated Feb 17, 2025
  • OC_Finder Public
    kiharalab/OC_Finder’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 1 0 0 Updated Jan 24, 2025
  • CryoREAD Public

    CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.

    kiharalab/CryoREAD’s past year of commit activity
    Python 28 4 0 0 Updated Oct 14, 2024
  • GO2Sum_Server Public

    The code for GO2Sum server

    kiharalab/GO2Sum_Server’s past year of commit activity
    0 0 0 0 Updated Oct 1, 2024
  • kiharalab/ComplexModeler’s past year of commit activity
    Python 3 0 0 0 Updated Sep 7, 2024

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…