devil case studies

Case studies of scRNAseq Differential Expression analysis using devil statistical tool

Public datasets

1. PBMC dataset (~160k cells) published by Hao et al. (2021) Cell
2. Human liver dataset (~170k cells) published by Guilliams et al. (2022) Cell
3. Human Muscle dataset (~130k nuclei), published by Lai et al. (2024) Nature
4. Pancreas dataset (~8k cells), published by Baron et al (2022) Cell Systems
5. Breast cell atlas (~800k cells), published by Reed et al (2024) Nat Genet
6. Immune system dataset across organs (~600k cells), published by Suo et al. (2022) Science
7. Blood dataset (~1.3 million cells), published by Yazar et al. (2022) Science
8. Breast dataset (~700k cells), published by Kumar et al. (2023) Nature
9. Human liver dataset (~8k cells), published by MacParland et al. (2018) Nat Comm
10. PBMC dataset (~45k cells), published by Lee et al. (2020) Science Immunology
11. Macaque brain (~2.5 million cells), published by Chiou et al. (2020) Science Advances
12. Healthy human blood (~1.9 million cells), published by Terekhova et al. (2023) Immunity

Dataset Table

	Dataset name	Tissue	Cells	Cell-types	Genes	Samples	Access
1.	Big Blood	Blood	161,764	8	11,929	8	CELLxGENE
2.	Big Liver	Liver	167,598	14	11,712	19	CELLxGENE
3.	HLMA	Skeletal muscle	126,124	2	16,489	22	HLMA
4.	Baron Pancreas	Pancreas	8,569	14	20,125	4	Original paper
5.	Bca	Breast	800,198	15	34,535	54	CELLxGENE
6.	Hsc	Multiple	589,390	47	33,145	25	CELLxGENE
7.	Yazar	Blood	1,248,980	29	36,571	981	CELLxGENE
8.	Kumar	Breast	714,331	39	33,145	126	CELLxGENE
9.	Small liver	Liver	8,444	15	32,839	5	Original paper
10.	Small blood	Blood	43,512	25	21,966	12	CELLxGENE
11.	Adult macaque brain	Brain	2,583,967	14	19,147	5	CELLxGENE
12.	Healthy human blood	Blood	1,003,209	9	36,601	166	HUman Cell Atlas