Numerous updates to files in repo directory 2023-0215/ as I regenerat…

…e gtfs and counts matrices, preparing to do new categorization work; #NEXTSTEPS Need to remake counts matrices for gtfs output by work_assess-process_R64-1-1_gff3_part-1.Rmd; #INPROGRESS Remaking counts matrices pa-ncRNA gtfs; #INPROGRESS Makking counts matrices for Trinity G1 and Q nascent transcriptomes; #NEXTSTEP #MAIN Need to incorporate the collapse/merged pa-ncRNA with the appropriate gtf from work_assess-process_R64-1-1_gff3_part-1.Rmd for categorization/proportion work
kalavattam · May 23, 2023 · 570fd3d · 570fd3d
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diff --git a/...ff3/comprehensive/S288C_reference_genome_R64-1-1_20110203/NotFeature_R64-1-1_20110203.gtf b/...ff3/comprehensive/S288C_reference_genome_R64-1-1_20110203/NotFeature_R64-1-1_20110203.gtf
diff --git a/...erence_genome_R64-1-1_20110203/saccharomyces_cerevisiae_R64-1-1_20110208.snRNA-snoRNA.gtf b/...erence_genome_R64-1-1_20110203/saccharomyces_cerevisiae_R64-1-1_20110208.snRNA-snoRNA.gtf
diff --git a/...-draft_evaluate-categories_expression.Rmd → ...valuate-categories_expression_initial.Rmd b/...-draft_evaluate-categories_expression.Rmd → ...valuate-categories_expression_initial.Rmd
@@ -1,6 +1,6 @@
 ---
-title: "rough-draft_evaluate-categories_expression.Rmd"
-output: html_notebookauthor: "KA"
+title: "rough-draft_evaluate-categories_expression_initial.Rmd"
+author: "KA"
 email: "[email protected]"
 output:
     html_notebook:
@@ -2583,7 +2583,7 @@ pivot_on_columns <- function(
 <details>
 <summary><i>Code: Load "comprehensive" `gtf` files</i></summary>
 
-```{r Load "comprehensive" gtf files, results='hide', message=FALSE, warning=FALSE}
+```{r TBD 1, results='hide', message=FALSE, warning=FALSE}
 #!/usr/bin/env Rscript
 
 p_gtf <- "./outfiles_gtf-gff3/comprehensive/S288C_reference_genome_R64-1-1_20110203"

diff --git a/results/2023-0215/rough-draft_evaluate-categories_expression_initial.nb.html b/results/2023-0215/rough-draft_evaluate-categories_expression_initial.nb.html
diff --git a/...evaluate-categories_expression_scraps.Rmd → ...-categories_expression_scraps_initial.Rmd b/...evaluate-categories_expression_scraps.Rmd → ...-categories_expression_scraps_initial.Rmd
@@ -1,6 +1,6 @@
 ---
-title: "rough-draft_evaluate-categories_expression_scraps.Rmd"
-output: html_notebookauthor: "KA"
+title: "rough-draft_evaluate-categories_expression_initial_scraps.Rmd"
+author: "KA"
 email: "[email protected]"
 output:
     html_notebook:

diff --git a/results/2023-0215/rough-draft_evaluate-categories_expression_scraps_initial.nb.html b/results/2023-0215/rough-draft_evaluate-categories_expression_scraps_initial.nb.html